| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1065 |
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| Symbol | |
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| ID | 3773997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 1075365 |
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| End bp | 1078484 |
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| Gene Length | 3120 bp |
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| Protein Length | 1039 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637799489 |
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| Product | DEAD/DEAH box helicase-like |
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| Protein accession | YP_400082 |
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| Protein GI | 81299874 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00124695 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.0212089 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGTGC ATTTAGAAAG TGCTTTTGAA GCAGAAATTT GCCAAGACCT CGCCCAGCAA
GGCTGGATTT ATGAGGAAGG CGCAGCCGCT GACTACGATC GCGCTTTAGC GCTTTATCCA
CCCGATCTGT TTGCTTGGCT CCAACAAACC CAACCGGAAG CTTGGGAAAC TCTGCAACAA
AAACAAGGCA CTCAAGCCGA AGCGATTCTG TTGCAACGAG TCCGGCAACA ACTCGATCAA
GTCGGCACCC TCGATCTGTT GCGCTATGGC CTCGAAGTCC TCGGACTGCC GCGATCGCTG
AAGCTGGCGC AATTCAAACC CGCCTTTGCT ACTAATGCCG AAATTCGCGA TCGCTACGAA
GCCAATCGGC TGCGCGTCAT TCGGCAAGTG CGCTATTCCC TCCACAATCA AAACTGTATT
GATCTCGTTC TGTTCCTGAA TGGCATTCCC GTCGCCACCG TCGAACTCAA AACCGATAAC
ACCCAAAACA TCGCCGACGC CGTTTATCAA TACAAACAAG ATCGCAACCC CAAACCCGCC
GGACAATCGC CAGAACCGTT GCTGAGTTTC CCGAGTGGCG CGATCGTGCA TTTCGCCGTC
AGTAATCGCG AAGTGCAAAT GACCACCAAG CTGGCGGGCT TTGCTACTGT TTTCCTACCC
TTTAACCAAG GCAGTGATCC AGGTGCGCCC GATTGTGGCG CGGGGAATCC TGTCAGCTCT
GCTAGTGGTC ACCGCACCGC TTATCTCTGG CAAGAGGTGT GGCAACGCGA TAGCTGGCTG
GAAATTCTGG GGCGCTATTG CATCACCGAG CGCAACAAGA AACAGCAAAT CACCCGCCTG
CTCTTCCCGC GCTATCACCA ACTGATCGTG ACGCGGCGAC TGCAAGAGGC GGTCCTGCAA
GAAGGGGCTG GCCACAAGTA TTTAGTGCAG CATTCCGCCG GTTCTGGCAA AACCAATTCG
ATCGCTTGGA CAGCGCATTT CTTTAGTGAA CTCCACGACG CCGATAACCG CAAAGTCTTC
GATTCCGTGA TCGTTGTTAG CGATCGCAAC GTCATTGATA CGCAACTGCA AGAAGCGATC
GAAAGTTTCG AGCGGCACAA AGGCGTGGTT GCTGCCATCA CCCGCGACGA CGGCAGCAAA
AGCAGCAAAC TTGCCGAAGC CCTCAAGGGC GATAAGAAAA TTGTTGTCTG CACGATTCAG
ACCTTTCCCT TCGCTCTGCA AGCCGTACGC GAACTGGCCG CCACCGAAGG TAAACGCTTT
GCTGTCATTG CCGACGAAGC CCACAGTTCT CAAACCGGCG AAGCCGCCAG CAAACTCAAA
CAACTGCTTT CTCCTGCCGA ACTCGCCGAT CTCAACGACG GCGGCGAAGT GGATCTCGAA
GCCGTCCTTG CGGCCCAAAT GAGCGATCGT GCCCGCGAAA GCGGCATCAC CTACGTTGCT
TTTACCGCCA CACCCAAAGC CAAAACGCTG GAATTATTCG GCAGACGTCC CGATCCCAAC
CGACCGGCTG GCCCTGATAA TCTGCCCATG CCCTTCCACG TCTATTCAAT GCGGCAAGCG
ATCGAGGAAG GCTTCATCCT CGATGTTCTG CAAAACTACA CCAGCTACAA AGTCGCCTTC
CGCCTTGCCC AAGCAGGCCA GCAGTTTAGC GATCAAGAAG TGGAGCGCAA CGCTGCCCTC
AAAAAGCTGA TGGGCTGGGT CAAGCTGCAT CCCCACAACA TCGCCCAGAA AGTCGCGATC
GTGGTTGAGC ATTTTCAGCA ATACGTCGCG CCACTGCTGA ATGGCAAAGC CAAAGCGATG
GTCGTGGTCG GTTCCCGCAA AGAAGCCGTG CGCTGGAAAC TAGCGATCGA TCGCTACATT
GCAGCAAAAC AGTACCGTCT CGGCACCCTT GTTGCCTTTA GTGGCGAAGT CCGCGATCGC
GATTCTGGCC CCGACCCGTT CACTGAAACC AGCCCCAACC TCAACCCCAA CTTACAAGGC
GACATCCGCG AAACCTTCAA AAGCGATCGC TACCAAATCC TGATCGTCGC CAACAAATTC
CAAACCGGCT TCGACCAACC CTTGCTCTGT GGCATGTACA TCGATCGGCG TCTTGCGGGC
ATCCAAGCCG TGCAAACTCT ATCGCGCCTC AACCGCTGCC ATCCCGGCAA AGACACCACT
TATATTGTCG ATTTCAGCAA CGATCCCGCT GAGATTCTGG CCGCCTTCAA GACCTACTAC
ACCACCGCTG AACTCGCCAG CGCCACCGAT CCCAACCTGA TCTTGGATCT GCGGCTCAAG
CTCGATGCTC AGAAGCATTA CGACGCATAC GAAATCGATC GCGTTGTCAA AGTTGTCCTC
AACCCCAACG CCAAACAAAG TGATCTGCAA AAAGCCCTAG AACCGATCGC CGAACGCTTG
CTGTATCAAT ACCGCAACGC TCGCCAAGCC GCCCGCACCG CCGAAGCCCA AAACGACCCT
GCCGCCCTCA AAACCGCCCA AGACGAACTC GCCGCCCTCA CCCTGTTCCG CAGCGACCTA
GGCACCTACG TCCGTCTTTA CACCTTCCTC TCGCAAATCT TCGACTACGG CAACACCGCT
TACGAAAAAC GCGCGATCGT CTTCCGTCGC CTGATCCCGT TGCTGGAATT TGAGCGCGAA
GTCGGCAGCA TCGACCTCTC CAAAGTTGTC CTGACTCACT ACCAAGTCCG CCACCAAGGC
GATCGCCGCC TCGATCTCCA ACAGGGCGAA GCCATCCCCG TCCCCGGCCT CCAACCCGGC
AAAGGTGTTG TCCAAGACCA AGAGAAAGTC TGGCTCTCAG CCCTGATCGT CAAACTGAAC
GAACTATTCA CAGGCGATCT CACCGACGCG GACAAGGTCA ACTACGTCAG CGTTGTCCTC
CGCAGCAAAC TCCTCGAATC CCCCACCCTG CGTCAGCAAG CGATCGCCAA CAGTAAAGAG
CAATTTGCGA GCTCCCCCGA CTTTGCCCAA GAACTGCTCG AAGCGATCAT CAGCGCCCTC
GACGCTCACC AATCCATGAG TAGCCAAGCC CTCAACTCTA AGCAGGTACA GGACGGCATC
AAAAACATCC TGCTCAACCA AACCGGCCTC TACGAAGAAC TGCGATCGCA AGCCGCCTAG
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| Protein sequence | MTVHLESAFE AEICQDLAQQ GWIYEEGAAA DYDRALALYP PDLFAWLQQT QPEAWETLQQ
KQGTQAEAIL LQRVRQQLDQ VGTLDLLRYG LEVLGLPRSL KLAQFKPAFA TNAEIRDRYE
ANRLRVIRQV RYSLHNQNCI DLVLFLNGIP VATVELKTDN TQNIADAVYQ YKQDRNPKPA
GQSPEPLLSF PSGAIVHFAV SNREVQMTTK LAGFATVFLP FNQGSDPGAP DCGAGNPVSS
ASGHRTAYLW QEVWQRDSWL EILGRYCITE RNKKQQITRL LFPRYHQLIV TRRLQEAVLQ
EGAGHKYLVQ HSAGSGKTNS IAWTAHFFSE LHDADNRKVF DSVIVVSDRN VIDTQLQEAI
ESFERHKGVV AAITRDDGSK SSKLAEALKG DKKIVVCTIQ TFPFALQAVR ELAATEGKRF
AVIADEAHSS QTGEAASKLK QLLSPAELAD LNDGGEVDLE AVLAAQMSDR ARESGITYVA
FTATPKAKTL ELFGRRPDPN RPAGPDNLPM PFHVYSMRQA IEEGFILDVL QNYTSYKVAF
RLAQAGQQFS DQEVERNAAL KKLMGWVKLH PHNIAQKVAI VVEHFQQYVA PLLNGKAKAM
VVVGSRKEAV RWKLAIDRYI AAKQYRLGTL VAFSGEVRDR DSGPDPFTET SPNLNPNLQG
DIRETFKSDR YQILIVANKF QTGFDQPLLC GMYIDRRLAG IQAVQTLSRL NRCHPGKDTT
YIVDFSNDPA EILAAFKTYY TTAELASATD PNLILDLRLK LDAQKHYDAY EIDRVVKVVL
NPNAKQSDLQ KALEPIAERL LYQYRNARQA ARTAEAQNDP AALKTAQDEL AALTLFRSDL
GTYVRLYTFL SQIFDYGNTA YEKRAIVFRR LIPLLEFERE VGSIDLSKVV LTHYQVRHQG
DRRLDLQQGE AIPVPGLQPG KGVVQDQEKV WLSALIVKLN ELFTGDLTDA DKVNYVSVVL
RSKLLESPTL RQQAIANSKE QFASSPDFAQ ELLEAIISAL DAHQSMSSQA LNSKQVQDGI
KNILLNQTGL YEELRSQAA
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