Gene Synpcc7942_0881 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0881 
Symbol 
ID3774058 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp887552 
End bp888427 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content58% 
IMG OID637799297 
Productprephenate dehydratase 
Protein accessionYP_399898 
Protein GI81299690 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0077] Prephenate dehydratase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.00114823 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCCGAGC GGGCGATCGC CCATTTGGGT CCCGTGGGTA CCTATGCCGA AATGGCTGCC 
CTGCGCTTTC AAGCTTGGTT GACCCAGCAG GATCAACAGC CCAGCCGTCT GCTTGCTTGT
CGGAGCATTC CAGCCACCTT ACAGACCTTG GCTGATGGTG CTGTTGACTA TGCCGTTGTG
CCCGTCGAAA ACTCGGTAGA GGGCAGCGTT GCCGCCACCC TAGATAGTCT TTGGCAGTTG
CCCCAACTGT CGATTCAGCG GGCACTCATT CTACCGATTG CCCATGCCCT GATTAGTTTT
GAGAGCGATC GCACGGCGAT CCGTCAGGTG CTCTCCCATC CCCAGGCCCT CGCGCAATGC
CAGCAGTGGT TGCAGCGGCA TCTGCCCCAA GCGGAATTGA TCCCCGCCAA TTCCACCACC
GAGGCCCTGC AGGATCTCGA ACGCCATCCC CAGCGGGCGG TCATTGCTTC GACCCGCGCT
GCAGAACTCT ATCAGATGCC AATTCAGTCC TTTCCCATCA ATGATTCCCC CGATAATCGC
ACCCGCTTTT GGGTGATTAG CCGCAGCCCT ACGCCGGGCG GGGCTTGTAC GTCCCTGAAC
TTCAGCCTGG ACGCCAATGT GCCGGGTGCG CTGGTCAAAC CCCTGCAGAT TTTGGCCGAT
CGCCGGATTA ACCTCAGCCG GATTGAGTCG CGACCAACCA AGCGATCGCT GGGTGAATAT
CTCTTTTTCT TGGACTTAGA GGCCGATCTG CGGGATCCTG CGATCGCAGC AGCCGTTCAA
GCCGTAGCTG ACTGTACAGA ACAACTGCGG GTGCTTGGCA GTTATGACAG CCTCGACTTT
ACCCAGTCTG TTTTAGTACC TGCACAGGCT CGCTAG
 
Protein sequence
MSERAIAHLG PVGTYAEMAA LRFQAWLTQQ DQQPSRLLAC RSIPATLQTL ADGAVDYAVV 
PVENSVEGSV AATLDSLWQL PQLSIQRALI LPIAHALISF ESDRTAIRQV LSHPQALAQC
QQWLQRHLPQ AELIPANSTT EALQDLERHP QRAVIASTRA AELYQMPIQS FPINDSPDNR
TRFWVISRSP TPGGACTSLN FSLDANVPGA LVKPLQILAD RRINLSRIES RPTKRSLGEY
LFFLDLEADL RDPAIAAAVQ AVADCTEQLR VLGSYDSLDF TQSVLVPAQA R