| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_0553 |
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| Symbol | |
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| ID | 3774791 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 535182 |
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| End bp | 536534 |
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| Gene Length | 1353 bp |
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| Protein Length | 450 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637798961 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_399572 |
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| Protein GI | 81299364 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTCCT CAACACCCAT GAAAGTGAAA TGGCTGGAGC CGATTCGGCA AGTTCACCCG
TGGGTGCTCA TCGTGATTGC GATCGCGGTG ATCGGCAGTG GATCGGGGAT CTGGTGGCTG
CTGCGATCGC GGGCGAGTGA AGCCGTTCTC GATCGCTACA CAGTGCCGGT CAAAGTCGAG
ACGCTACAAG AGAAAGTGAC TGCCAGCGGT AGCATTGTTC CGATTCGCAC CGTCAACCTC
AGCCCCAAGA CCGCCGGTCT CTTGGTCGAA GTGTTGGTGG AGCAAGGACA GAAAGTCCAG
CAGGGTCAGC TGATCGCCCG CATGGATAAC CGCGAGCTCC GCGCCCAGCA ACTCCAAGCC
CGAGCCGCAC TCGCTGCTGC CCAGGCACAA CTCCAGGTAC TGCGCAACGG CACTCGCCCT
GAAGTGCTTG ACCAAGGTCG CGAAGCGATT CGCCAGGCTC AAGCGGCTGC CCAACAAGCC
GCCGCGCGTC GCGCTCTGGC CCAGCAGGAA TTAAAACGGC AGGAAGCCTT GGTAGGAGAA
GGGGCGATCG CTCGCCAAGC CTACGATCGC GCTTTGACTG ATGCGGCTGA AACCGATGCG
GCCCTCCAAC AGGCGATCGG GCGGTTGCGT GAGGTCGAAC GTCGCCAGCA GGAATTGCAA
AATGGCGCTC GGCCCGAAGA AGTTCGGCAG GCCGAAGCCC GCGTTGGTGA AGCGATCGGT
CGCCTCCAAT CCGTAGAAGT GCAGCTTGCC GACACAGAAA TTCGCGCGCC CTTCAGCGGC
ATCATTACTC AGCGCTACGC CGATCCGGGC GCTTTTGTGA CGCCAACCAC CTCTGCTTCC
GCCACCGCCA GCGCCACGTC TACCTCGATC GTCGCCCTCG CCGAAGGACT GGAAGTGCTG
GCACAAGTCC CAGAAGTGGA CATCAGCCGC ATTCGTGTCG GCCAGTCGGT ACAGGTGCGG
GTCGATGCTT TCCCGACACA GACCTTTGAG GGCAAGGTGC GGTTGGTAGC ACCAGAAGCA
GTGGAAGAGC AAAACGTCAC CTCTTTTCAG GTTCGGGTGA CCTTGCAAAC TGGCCAGAAC
CAGCTGGGAT CCGGGATGAA CGCGGACCTC GACTTCATTG GGCGATCGCT GCCCCGAGCA
CTGGTGATCC CAACCGTCGC GATCGTCACC CGCGAAGGCA AAAGCGGGGT GCTGATTCCC
GATACTGCCG GCAAGCCGGA GTTTCGACCG GTGATTTTGG GTGCTGCCGT TGGCAACGAA
ACCCAAATCC TACAAGGACT CCAGCGCGAT GAACGGATCT TTATTGACCT CCCGCCGGGA
CAGAAGTGGA ACCCCGAAAC CAGCGATCGC TAG
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| Protein sequence | MTSSTPMKVK WLEPIRQVHP WVLIVIAIAV IGSGSGIWWL LRSRASEAVL DRYTVPVKVE
TLQEKVTASG SIVPIRTVNL SPKTAGLLVE VLVEQGQKVQ QGQLIARMDN RELRAQQLQA
RAALAAAQAQ LQVLRNGTRP EVLDQGREAI RQAQAAAQQA AARRALAQQE LKRQEALVGE
GAIARQAYDR ALTDAAETDA ALQQAIGRLR EVERRQQELQ NGARPEEVRQ AEARVGEAIG
RLQSVEVQLA DTEIRAPFSG IITQRYADPG AFVTPTTSAS ATASATSTSI VALAEGLEVL
AQVPEVDISR IRVGQSVQVR VDAFPTQTFE GKVRLVAPEA VEEQNVTSFQ VRVTLQTGQN
QLGSGMNADL DFIGRSLPRA LVIPTVAIVT REGKSGVLIP DTAGKPEFRP VILGAAVGNE
TQILQGLQRD ERIFIDLPPG QKWNPETSDR
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