| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_0430 |
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| Symbol | |
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| ID | 3773375 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 419382 |
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| End bp | 421292 |
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| Gene Length | 1911 bp |
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| Protein Length | 636 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 637798836 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_399449 |
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| Protein GI | 81299241 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.620387 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.394102 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATCTCA GCGAAATTAC CCATCCCAAC CAGCTCCACG GGTTGTCGGT TGCTCAGCTT
GAGCAAATTG GCCACCAGAT TCGTGAGAAG CACCTGCAGA CGGTTGCAGC GACCGGTGGG
CACCTCGGGC CGGGCTTGGG CGTGGTGGAA TTGACCCTAG CGCTTTACCA AACGCTCGAT
CTCGATCGCG ACAAAGTGGT TTGGGACGTT GGCCACCAAG CCTATCCCCA CAAGCTGCTG
ACAGGGCGCT ATCACAACTT CCATACCTTG CGGCAAAAGG ATGGCATTGC GGGCTACCTG
AAGCGCACGG AAAACCGCTT CGATCATTTC GGTGCCGGTC ACGCTTCCAC CAGTATTTCT
GCTGCCCTCG GTATGGCTCT AGCACGGGAT GCCCAGGGCG AAGACTACCG ATGTGTCGCT
GTGATTGGTG ATGGATCGCT CACCGGTGGC ATGGCCTTGG AAGCCATCAA CCACGCTGGT
CACTTGCCCA AAACACGGCT GTTGGTCGTG CTCAACGACA ATGACATGTC GATCTCGCCC
AACGTGGGTG CGCTCTCTCG CTATCTGAAT AAGATTCGGG TTAGTGAGCC GATGCAGTTG
CTCACCGATG GTTTGACCCA GGGGATGCAA CAAATTCCCT TCGTCGGCGG CGCCATTACC
CAAGGCTTTG AGCCGGTTAA GGAAGGCATG AAGCGCCTCT CCTACAGCAA GATTGGGGCG
GTCTTTGAAG AGCTGGGCTT CACCTACATG GGGCCAGTGG ATGGTCACAA CCTTGAAGAA
CTGATCGCCA CCTTCCGCGA AGCGCACAAA CACACCGGAC CAGTACTCGT CCACGTTGCC
ACAACCAAGG GTAAGGGCTA TCCCTACGCT GAAGAAGATC AGGTTGGCTA TCATGCCCAA
AATCCCTTTG ATCTGGCGAC AGGGAAGGCT AAACCAGCTT CAAAACCGAA GCCGCCTAGC
TATTCCAAAG TGTTTGGCCA AACCCTGACG ACCTTGGCCA AGAGCGATCG CCGCATTGTC
GGGATTACGG CTGCGATGGC GACAGGCACC GGCTTGGACA TTCTCCAGAA GGCGCTGCCG
AAGCAATACA TCGATGTTGG CATTGCCGAA CAGCACGCCG TGGTGCTAGC TGCCGGTATG
GCCTGCGATG GCATGCGTCC GGTGGTGGCA ATCTATTCCA CCTTCCTGCA GCGGGCCTTT
GATCAAGTCA TCCACGACGT TTGTATCCAA AAGCTGCCCG TCTTCTTCTG CCTCGATCGC
GCGGGGATAG TTGGCGCGGA TGGCCCGACT CACCAAGGCA TGTACGACAT TGCTTACCTG
CGGCTGATTC CCAACATGGT GCTGATGGCA CCGAAAGATG AGGCCGAACT GCAGCGGATG
CTAGTGACGG GTATTGAATA CGACGGCCCG ATCGCCATGC GTTTCCCGCG CGGGAATGGT
ATTGGCGTAC CCCTGCCGGA AGAAGGCTGG GAGTCGCTCC CGATTGGGAA AGCAGAGCAA
CTGCGCCAAG GCGATGATTT GCTGATGTTG GCTTACGGCT CGATGGTCTA TCCGGCCCTG
CAGACGGCAG AACTGCTGAA TGAGCACGGC ATCTCAGCTA CTGTGATCAA TGCCCGCTTC
GCCAAGCCCT TAGATGAGGA ACTGATTGTG CCGCTGGCGC GCCAGATCGG CAAAGTCGTC
ACCTTTGAGG AAGGCTGCCT ACCCGGCGGC TTTGGCTCCG CGATTATGGA GTCCTTGCAG
GCCCATGATC TGCAGGTTCC GGTGTTGCCG ATCGGTGTTC CCGATCTCTT GGTGGAACAT
GCCAGCCCTG ATGAATCTAA GCAGGAGTTG GGCCTGACGC CGCGTCAGAT GGCCGATCGC
ATCCTCGAAA AGTTTGGAAG CCGTCAACGG ATTGGTGCTG CTTCGGCTTG A
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| Protein sequence | MHLSEITHPN QLHGLSVAQL EQIGHQIREK HLQTVAATGG HLGPGLGVVE LTLALYQTLD
LDRDKVVWDV GHQAYPHKLL TGRYHNFHTL RQKDGIAGYL KRTENRFDHF GAGHASTSIS
AALGMALARD AQGEDYRCVA VIGDGSLTGG MALEAINHAG HLPKTRLLVV LNDNDMSISP
NVGALSRYLN KIRVSEPMQL LTDGLTQGMQ QIPFVGGAIT QGFEPVKEGM KRLSYSKIGA
VFEELGFTYM GPVDGHNLEE LIATFREAHK HTGPVLVHVA TTKGKGYPYA EEDQVGYHAQ
NPFDLATGKA KPASKPKPPS YSKVFGQTLT TLAKSDRRIV GITAAMATGT GLDILQKALP
KQYIDVGIAE QHAVVLAAGM ACDGMRPVVA IYSTFLQRAF DQVIHDVCIQ KLPVFFCLDR
AGIVGADGPT HQGMYDIAYL RLIPNMVLMA PKDEAELQRM LVTGIEYDGP IAMRFPRGNG
IGVPLPEEGW ESLPIGKAEQ LRQGDDLLML AYGSMVYPAL QTAELLNEHG ISATVINARF
AKPLDEELIV PLARQIGKVV TFEEGCLPGG FGSAIMESLQ AHDLQVPVLP IGVPDLLVEH
ASPDESKQEL GLTPRQMADR ILEKFGSRQR IGAASA
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