Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Synpcc7942_0241 |
Symbol | |
ID | 3773804 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus elongatus PCC 7942 |
Kingdom | Bacteria |
Replicon accession | NC_007604 |
Strand | + |
Start bp | 235487 |
End bp | 236854 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 637798647 |
Product | 23S rRNA (uracil-5-)-methyltransferase RumA |
Protein accession | YP_399260 |
Protein GI | 81299052 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.468571 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.547918 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTTCTT CTGCCGTGCT TACTTGGCGT CAGGGCGATC GCCTCAGCCT GACGATCGAG TCGCTCTGTG ACAGCGGCGA CGGCCTCGGG CGCGTAGAGG GACGCGTGGT TTTTGTGCCC GATACGGTGC CGGGCGATCG CATTCAAGCC AAGCTGCTGC AGGTGCGATC GCGTTATGCC CGTGCCGAGC TAGAAGAAGT GCTGGAGGCA TCACCGGATC GGATTCGACC GGCCTGCATC GTTGCGGATA AGTGCGGTGG CTGTCAGTGG CAAACCGTGG ACTACCCTGC CCAAGTCGAG GCAAAAACGG TGATTGTCCA AGACGCCATG CAACGGTTGG GGCAACTCGA GACGGAAGTT CAACCGACGA TTGCAGCTCC CTATCCGCTG GGCTATCGCA ACAAGGTCAG CTATCCGCTC CGGCGCAGCG ATCGCGGGGA GGTGCAAGCG GGCTACTTCC GTAAAGGCAG CCACCGCCTG ATCAACCTCA ATCAGTGTCC GGTACAAGAT GACCGCTTGA ATCCGCTGCT CGCAGGCATC AAGGCTGATA TTGCAGCTCG GGATTGGCCG ATCTATGACG AGCAGACCCG ATCGCGTGGC CTCCGGCATT TGGGACTGCG CATCGGTCAG CGTACCGGTG AGATCCTGAT CACTTTGATT GCTACCGACG ATCAGTTGCC AGAGGTGGAA GCTCAAGCAG AACAGTGGCT GACCGACTAT CCCAATGTGG TCGGGGTTTG CCTCAACCTC AATCCCAGCC ACGGCAATCG CATTCTGGGT GACGAGACCC ATTGTTTAGC GGGTCGTCCT TATCTGATTG AGTGTTTGGA CGATTTGGAA TTTGCAATCG GACCGGAGAC CTTTTTCCAA GTCAATACAG AGCAAGCAGA GCGCCTGCTG CCAATCCTCA AAGACTTTTT GCGGGGCAGC GATCGCCTCT TCGATCTCTA CTGCGGCGTC GGGACATTAA CCCTGCCTTT GGCCAGTGAG GTAGGGTCAG TGCTGGGGCT AGAAATCCTG CCGGAATCGG TGGTGCAAGC GCAACAAAAT GCTGATCGCA ATGGCATCAG CAATGTTGAA TTTCGGGCGG GTGCGGTCGA GATCTTACTC GCGCAAATTC CCGAGTCTCC CGATGCTGTT CTTCTAGATC CGCCGCGCAA AGGCTGCGAA CCAGCGGTGA TTGAAGTGCT GCGCGATCGC CAACCGCAAC GCATTGCCTA CGTGAGCTGC AACCCTGCAA CCCTGGCCCG CGATCTCCAA GCCCTCTGTG CGGGCGATCG CTATCGTCTA TTGCTCGTGC AACCCCTAGA TTTCTTCCCG CAGACCGCCC ATGTTGAGAC AGTCGCACTC CTCGAATTGC AAGATTAG
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Protein sequence | MSSSAVLTWR QGDRLSLTIE SLCDSGDGLG RVEGRVVFVP DTVPGDRIQA KLLQVRSRYA RAELEEVLEA SPDRIRPACI VADKCGGCQW QTVDYPAQVE AKTVIVQDAM QRLGQLETEV QPTIAAPYPL GYRNKVSYPL RRSDRGEVQA GYFRKGSHRL INLNQCPVQD DRLNPLLAGI KADIAARDWP IYDEQTRSRG LRHLGLRIGQ RTGEILITLI ATDDQLPEVE AQAEQWLTDY PNVVGVCLNL NPSHGNRILG DETHCLAGRP YLIECLDDLE FAIGPETFFQ VNTEQAERLL PILKDFLRGS DRLFDLYCGV GTLTLPLASE VGSVLGLEIL PESVVQAQQN ADRNGISNVE FRAGAVEILL AQIPESPDAV LLDPPRKGCE PAVIEVLRDR QPQRIAYVSC NPATLARDLQ ALCAGDRYRL LLVQPLDFFP QTAHVETVAL LELQD
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