| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_0208 |
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| Symbol | |
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| ID | 3775816 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 209056 |
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| End bp | 211827 |
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| Gene Length | 2772 bp |
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| Protein Length | 923 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 637798614 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_399227 |
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| Protein GI | 81299019 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.877042 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCAGATCA CGGCAGCAGC ACAGCACGAC TACCAACAGG CGATCGCGGC TTATCAAGCG
GGAGAGTTTG AGGCGGCGAT CGCTCAACTG GATCGGCTGC TCGGTGACGT TCCCGATTGG
GCGGCTGCGC TTGGCTTGCA AGGTTTGTGT TATTACTGCT GCGACCAGAA AGAGACTGGA
ATTACGCTGC TGCGCCGAGC GATCGCGCTC GATCCCACGG ATCCAACTCA CTTCAACAAT
CTCGGTAATC TCCTGCAACG GCAGGGCCAC CTCACTGAAG CCCTAGAGCG GCTTACTCAA
GCGCTGGCGA TCGATCCAAC CCATGTGGCA GCTCGTTTCA ATCGCGCCAT TACCCTGCAA
AAACTCGGCG ATCCAGCGAC GGCTCTGCAG GACTATCAAC AACTTTTGGA GGCAGATCCC
GACAACCCTG AAATTCGCTA TAACAGCGCC CATGCCGCCC TCGCGATCGG GGACTGGGAC
TTTGGTCTAC CCGCCTACGA AGCTCGCTGC CAACAACTTC AACACTTTCC CGAAATTGAA
GCCTCGCTGA AACTACCGCG TTGGCAGGGG CAAGACTTAG ATCAACAAAC GCTCTTGGTC
TGGGGAGAAC AGGGCTTTGG CGATCGCCTG ATGGGGGCGC GATGGATACC TCTGCTGCGC
CAGCGCTATC CCCAAGCCCG CATCGTTTGG CAGACTAGCC CGTCTTTAGT CCGGCTCTTT
CAAACGCTGG CGGACGATCG ACTCATGGTA CTGGCCGAAG GGGCTGAGTT ACCTGTCTGC
GATTGGCAAG TGCCTTTGCT GTCGCTGATG TTGATTTTTC AAAGCGATCG CAACCGCTTG
CCTTGGCATG GCCCTTACTT CTTCCCACAT AAGGGTGATT TCCTACCAGC AAGCGATCGC
CCCCGACTGG GACTTGTTTG GAGCGCGGGT CGCAATCCGG CGCAATCGGC GGAATTTGCC
GCTAATAAAA GCTGTCCGCT GGCATTGCTC TGGTCGGTGC TATCGGTGTC CGGCTGGGAC
GTTGTCTCGC TCCAAGTTGA TGAGGCACGG CAGGATTTAC AGACGCTTTC GGATCCGCTG
CTCGATCTCG GCAGTGAGAT TGGCGATTTT CAGGACACCG TCGATCGCTT AGCCCATCTG
GACTTACTGA TCACGGTTGA TACGGCGATC GCTCATCTCG GCGGCATGAT TGGGCTACCG
ACTTGGGTGC TGCTGCCCGC AGTTCCCGAT TGGCGCTGGG AACTTTCTGG TGCCACTACG
CCGTGGTATC CCAGCCTGCG ACTGTTCCGA CAACCCAGCC CCGGTGATTG GTCAGGGGCG
ATTGCGGAAC TCCAAACGGC GCTGGCTGAG TTTCAACCGG CTCCCCAGCA CTGGGACTAT
CGAGGCGAGT TATCCATAGC GGATTGGATT CAAGCCGCCG ATCGCGCTTT CACCGCTCAG
AACTGGCCAA GAGCTGAATG GTTGATTCGA CAGGCTGTGG CGATCGCCCC CGAGGAGCCG
TCCTTTCATC GCGCTTTAGG TCGCAGTCTC AAGCAGCAGG GCGACTACGC CGGTGCGGCC
CAAGCCCTCG CGATCGCCTG TGAGTTAGCC CCCACGCAAG CGGAGTTCTG GCACGAGCGA
TCGAGTTTGG AGTACTACGA CAATCAGTTG ACCGCTGCGC TGAACAGTCT GAATCAGGCG
ATCGCGTTGC AAGGAGCGAC TGCCGATCAC TTGATTAGCC GAGGTGTGCT TCACTATCGT
CTGGGTCAAT TCCCCGAATC CTGCGCCGAC TACGACGCTG CCGCTGCGAT CGCTCCTGAG
AGCCCACTGC TGCGCTGCAA TCGCGGTTTC TTACAACTGC ACTGGGGCAA CTGGCTGCAG
GGCTGGCCTG ATTTAGAAGT GCGCTTCGAC TTCCAGTCCG ATCTTGATCC ATTTCAGTAC
CGCCAACTGG CTCCGGCTTG GCAGGGTGAA CCGCTTGGTC AGCAAACACT CTTGATTTGG
GGTGAACAAG GACTGGGTGA TCATCTGCTC TTCTGTCGAT GGCTCCCAGA ACTACGCCTG
CAGCATCCCC AAGCCCAGCT CATTTTCGTC ACCGATCCGC TGCTGGAGCG GCTGATGCAG
CAACTGGCGG ACGATCGCCT TCAAATTTGC TGCTTGGATG AACCTGTCCC AGCCTGCGAT
CGCCAAGTGG CGCTGATGTC GTTGCCCGCG ATCGCGCAAA CCACACCCGC AACGGTGCCT
TGGCGCGGAG CCTATTTCCA AAGCAGTATG CCGCCCCTGC GCTGTGCCGA GACGCTCCAA
GTCGGCTTTG TTTGGGCTTC CGGCAAGCGA TCATCCCCAG AAACCGCTCG CCTTTACCGC
GAAAAAAGCT GTCCGCTCAA CGAACTGCTA CCGGCGCTGC TAGCTGTCCC AGCGGTTGAT
TATTACAGCT TCCAAGTGGG CGCTGACGTG GCTGAACTGC AACCTTGGTT AGAGCAGAGC
GATCGCCTAT TTGACCTGAG TGAGCAACTA CAGGATTTTC AAGACACGGC CGACTGGCTG
GCGGAAATGG ATGTGCTGAT TTCTGTTGAT ACCGCAGTGG CGAATCTAGC GGGGATGATG
GCGCTGCCCG TCTGGACACT CCTACCCGAA CCCGCCAATT GGCGCTGGGG CCTCACGGGT
CATACGACGC CTTGGTATCC GAGCATGCGC CTCTATCGCC AGACCCAACG CGGTAATTGG
AGTGGCGCGA TCGCCCAAAT TCAACAGGAT TTACAGCAGC TCAGCCGCGA TCGCGACTGT
CTCGTGACTT AG
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| Protein sequence | MQITAAAQHD YQQAIAAYQA GEFEAAIAQL DRLLGDVPDW AAALGLQGLC YYCCDQKETG
ITLLRRAIAL DPTDPTHFNN LGNLLQRQGH LTEALERLTQ ALAIDPTHVA ARFNRAITLQ
KLGDPATALQ DYQQLLEADP DNPEIRYNSA HAALAIGDWD FGLPAYEARC QQLQHFPEIE
ASLKLPRWQG QDLDQQTLLV WGEQGFGDRL MGARWIPLLR QRYPQARIVW QTSPSLVRLF
QTLADDRLMV LAEGAELPVC DWQVPLLSLM LIFQSDRNRL PWHGPYFFPH KGDFLPASDR
PRLGLVWSAG RNPAQSAEFA ANKSCPLALL WSVLSVSGWD VVSLQVDEAR QDLQTLSDPL
LDLGSEIGDF QDTVDRLAHL DLLITVDTAI AHLGGMIGLP TWVLLPAVPD WRWELSGATT
PWYPSLRLFR QPSPGDWSGA IAELQTALAE FQPAPQHWDY RGELSIADWI QAADRAFTAQ
NWPRAEWLIR QAVAIAPEEP SFHRALGRSL KQQGDYAGAA QALAIACELA PTQAEFWHER
SSLEYYDNQL TAALNSLNQA IALQGATADH LISRGVLHYR LGQFPESCAD YDAAAAIAPE
SPLLRCNRGF LQLHWGNWLQ GWPDLEVRFD FQSDLDPFQY RQLAPAWQGE PLGQQTLLIW
GEQGLGDHLL FCRWLPELRL QHPQAQLIFV TDPLLERLMQ QLADDRLQIC CLDEPVPACD
RQVALMSLPA IAQTTPATVP WRGAYFQSSM PPLRCAETLQ VGFVWASGKR SSPETARLYR
EKSCPLNELL PALLAVPAVD YYSFQVGADV AELQPWLEQS DRLFDLSEQL QDFQDTADWL
AEMDVLISVD TAVANLAGMM ALPVWTLLPE PANWRWGLTG HTTPWYPSMR LYRQTQRGNW
SGAIAQIQQD LQQLSRDRDC LVT
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