Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Synpcc7942_0188 |
Symbol | |
ID | 3775796 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus elongatus PCC 7942 |
Kingdom | Bacteria |
Replicon accession | NC_007604 |
Strand | + |
Start bp | 185682 |
End bp | 187418 |
Gene Length | 1737 bp |
Protein Length | 578 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637798594 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_399207 |
Protein GI | 81298999 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATTGCCC GTCCTATGGT GCCAACCGCG GATCAACTTG CCACAGATGA CTTGAGTCTG TCGGATCGAT CGCGATTTTG GCTGGCGGCT CTTGAAGCAT CGGGACAGGG TGTGGCGATC GCAGATGCTA CGCATCCTGA TTTGATCCTG ACCTACGTCA ATTCGGCCTT TAAAAAGCTA ACTGGCTACA ACGCCGCCGA AGCGCTCGGT AAAAGTTGTC GTTTTCTGCA GGGAAGCGAT CGCGCCCAGC CTGGTATTAC CACGCTCCGG CAAGCCATTC GCAACGGTCA AGCCTGCGAA GTTGTTCTGC GTAACTACCG CAAAGATGGC TCGTTGTTTT GGAATCAGCT GACGATCGCA CCGATTACGG ACGGTCAAGG CAAGGTCTCG CACTACGTCG CGTTGCAACG CGATATCACG GCCTTTAAAG AGCAGGAACA GGCGCTGCAG CGCCAGGGCA TTTACGACGA GCATTCGGGT CTACCCAAAC GTCAGCTTTT CCTCGATCGC TTGAATCAAG CGCTGGCTTG GAGTCAATTT AGCGGCGTAC CGGGTGCCTT GCTGTTGATT GATTTAGGTC TGCCAGCACA CCTCGATGGC AGCCCGAGCC TCAGCCCTGA TGCTGAGGAA AACCTTGAAA TCATTGCCAA TCGGCTTCAG GCCTACGTTC GTCCCCACGA AACCCTAGCG CACCTCAACC ACCATCAATT TGGGTTGCTG CTGCTCGATC CCGATGTGCA ACTCCGAGCA GAAGAGCGAG CTCACGGCAT TCAAACCTTG ATTCGCGATC GTTTGGCTGG GTTTGAGGGC GGTGCTCATA TCGGCATCGT CCCCCTGACC CCAGAGACTC CTGCTACGGT CTTGCTCCAA GCGGCGGAAG CCGCTGCCAT GACAGCGCGA TCGCAGCAAC AAGGTCACCT CAGTCTCGAA GCGAGTGCCA TTGTGGCAGC TCCAGAGCAG TATTCCCGCG ATCGCGATTG GCAACAGGCG ATCGCAGCAG GTGAACTGAC ACTCGCTCTG CAACCTCAAA TGGGCCTGCG CAACCGCCAA TTGCGGGGAT TTGAAGTTCA GCTACGCTGG CAGCATCCCC AACAAGGCAC CTTGCTGGCC TCGCAACTGA TGGAGCATTT AGAACAGTCC CAGCACCGAG AAACGGTGGG GCGCTGGTTC CTCGATCAAG CGGGTCAATT GCTTAGCCAA TGGCGAAACA GTGCCCAATT TAGTGGTCTG TTTGCTCTAT CGCTGTTGCC GCAACAGTGG AAGTCACCCA GCTTTATCCA TGACTTGCGC AGCTTGCTGG AAACCTACCA GATCCCGCCC GAGCAGCTAG AGCTCGATCT GCCTGCTCAG AGCTTAGCGG AGTCTGCCGC CGAGTCTTGG GATTGGGTCT ATGCGGTGCG CGATTTAGGC ATTGGCATTG GCCTCGCTGA TTTCGGTAGC CGCTCGATTG GTCTGTATGA CCTGCGTAAC TTGCCTCTAA CGACCCTCAA ACTGGAACGC CGGTTTGTGC GCGGGCTCCC TGATGATGCC AACGATCGCG CGATCGTGCG GGGGGTCGTA GCTATGTCGC AAGCCCTCAA GGTGCGGATT GTGGCGCGGG GCGTTGATAC GGTTGACCAA GCCAAGTTCT TGGCACGGGC CGAATGTGAC GCCATGCAAG GGTTGGCCTA CTCCGCACCG TTGACCATTG AAGAAGCGCT GCAAGTGGCG CGATCGCCCC AAGCTCCCGC TTGGTAG
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Protein sequence | MIARPMVPTA DQLATDDLSL SDRSRFWLAA LEASGQGVAI ADATHPDLIL TYVNSAFKKL TGYNAAEALG KSCRFLQGSD RAQPGITTLR QAIRNGQACE VVLRNYRKDG SLFWNQLTIA PITDGQGKVS HYVALQRDIT AFKEQEQALQ RQGIYDEHSG LPKRQLFLDR LNQALAWSQF SGVPGALLLI DLGLPAHLDG SPSLSPDAEE NLEIIANRLQ AYVRPHETLA HLNHHQFGLL LLDPDVQLRA EERAHGIQTL IRDRLAGFEG GAHIGIVPLT PETPATVLLQ AAEAAAMTAR SQQQGHLSLE ASAIVAAPEQ YSRDRDWQQA IAAGELTLAL QPQMGLRNRQ LRGFEVQLRW QHPQQGTLLA SQLMEHLEQS QHRETVGRWF LDQAGQLLSQ WRNSAQFSGL FALSLLPQQW KSPSFIHDLR SLLETYQIPP EQLELDLPAQ SLAESAAESW DWVYAVRDLG IGIGLADFGS RSIGLYDLRN LPLTTLKLER RFVRGLPDDA NDRAIVRGVV AMSQALKVRI VARGVDTVDQ AKFLARAECD AMQGLAYSAP LTIEEALQVA RSPQAPAW
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