Gene Synpcc7942_0139 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0139 
Symbol 
ID3773479 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp140268 
End bp142106 
Gene Length1839 bp 
Protein Length612 aa 
Translation table11 
GC content58% 
IMG OID637798545 
Productacetolactate synthase 3 catalytic subunit 
Protein accessionYP_399158 
Protein GI81298950 
COG category[E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism 
COG ID[COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] 
TIGRFAM ID[TIGR00118] acetolactate synthase, large subunit, biosynthetic type 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCAACTGC AGACGGTCAC CATTCAACAG CGTGCGACCG GTGCTTATGC GCTGATTGAT 
AGTCTCTGTC AGCACGGAGT TAAGCACATC TTTGGCTATC CAGGTGGGGC AATCCTGCCC
ATCTACGACG AGCTGCATCG GGCTGAGGCG GCTGGCCGTG TTCAACATAT TTTGGTACGC
CACGAGCAGG GTGCAGTCCA TGCGGCAGAT GCCTACTCGC GAGCCACGGG TGAAGTCGGG
GTTTGCTTTG CGACTTCTGG TCCTGGTGCA ACCAATCTCG TAACCGGGAT TGCTACGGCC
CAGATGGACT CGATCCCGAT GGTGGTGGTG ACGGGGCAGG TGCCTCGCAC GGCGATCGGA
ACCGACGCTT TCCAAGAGAC AGACATCTAC GGCATCACGC TACCAATCGT CAAACACTCC
TACGTGGTGC GCGATCCACG GGACATGGCG CGGATTGTGG CGGAAGCCTT CCACATTGCC
CAATCGGGTC GTCCTGGCCC TGTCTTGATC GATGTGCCCA AGGATGTCGG CACTGAGGAA
TTTGATTATG TGCCTGTGGC TCCGGGGGAT ATTCGACTGC CGGGCTATCG TCCGACAACT
CGGGGCAACC CACGTCAGAT TGCTCAGGCG ATCGCTCTGG TGAAAGTAGC CCGTCGGCCC
TTGCTCTACG TTGGTGGCGG CGCAATTACG GCCGGCGCCC ATGCGGAGCT GCGGGCCTTT
GCAGAGCGCT TCCAACTGCC GGTAACAACG ACTCTGATGG GCAAAGGGGC CTTTGATGAG
CGGCACCCCT TGGCGCTTGG CATGCTGGGG ATGCACGGCA CGGCCTATGC CAACTTCGCC
GTCAGCGAAT GTGATCTGCT GATTGCGGTG GGTGCCCGCT TTGACGATCG TGTCACGGGC
AAACTGGATG AGTTCGCCTC CAAAGCGCAA GTTATTCACG TTGATATCGA TCCGGCCGAA
GTCGGTAAAA ACCGCGTGCC GGAAGTGCCA ATCGTGGGCG ATGTCCGCCA GGTGCTGAAT
GAGCTTCTGG CGCGTGCCGA AGAGCAAATC AGCGCCGATG ATGCGACTCG AACTCAGCCT
TGGCTCGATC GCATTGCCTA CTGGAAGCGG GAATATCCTC TGCAGATTCC CTACTACGCT
GATGTGCTCT CACCCCAACA AGTGATTCAC AGTTTGGGAG AAGCAGCACC GGATGCTTAC
TTCACCACGG ATGTGGGTCA GCACCAAATG TGGGCTGCTC AGTTCATCAA GAATGGTCCC
CGTCGTTGGA TCTCTAGTGC AGGTCTCGGT ACGATGGGCT TTGGTATGCC GGCCGCTATG
GGAGCACAAA TGGCTCTGCC GGATGACACC GTCATCTGTG TGGCTGGGGA TGCCAGCATC
CTGATGAATA TTCAGGAGCT GGGGACCCTA GCGCAGTACA ACATCCCGAT CAAGGTCGTT
GTTGTCAATA ATGGCTGGCA GGGGATGGTG CGCCAGTGGC AAGAAGCGTT CTACGACGAG
CGCTATTCCA ACTCCAACAT GGAGCGGGGC ATGCCCGACT TTGTGAAACT GGCAGAAGCC
TTTGGTATCA AAGGGATGCG CGTTAGTCAT CCAGACGAGC TGCAAGCAGC GATCGCTGAA
ATGTTGGCCT TTGATGGGCC GGTGTTCTTG GATGCGATCG TCAAGAGGGA TGAAAACTGT
TATCCGATGG TGCCCTCTGG TCACAGCAAT GCGCAGATGC TGGGCTTGCC CAAGGACCCG
ACGCTGGATT TGGATTTGGC GATCGCGACC TGTTCGAGCT GCGGCGCGAA AACCCTGCCC
AGCCACAAGT TCTGTCCGGA CTGCGGCGCT AAGCTCTAG
 
Protein sequence
MQLQTVTIQQ RATGAYALID SLCQHGVKHI FGYPGGAILP IYDELHRAEA AGRVQHILVR 
HEQGAVHAAD AYSRATGEVG VCFATSGPGA TNLVTGIATA QMDSIPMVVV TGQVPRTAIG
TDAFQETDIY GITLPIVKHS YVVRDPRDMA RIVAEAFHIA QSGRPGPVLI DVPKDVGTEE
FDYVPVAPGD IRLPGYRPTT RGNPRQIAQA IALVKVARRP LLYVGGGAIT AGAHAELRAF
AERFQLPVTT TLMGKGAFDE RHPLALGMLG MHGTAYANFA VSECDLLIAV GARFDDRVTG
KLDEFASKAQ VIHVDIDPAE VGKNRVPEVP IVGDVRQVLN ELLARAEEQI SADDATRTQP
WLDRIAYWKR EYPLQIPYYA DVLSPQQVIH SLGEAAPDAY FTTDVGQHQM WAAQFIKNGP
RRWISSAGLG TMGFGMPAAM GAQMALPDDT VICVAGDASI LMNIQELGTL AQYNIPIKVV
VVNNGWQGMV RQWQEAFYDE RYSNSNMERG MPDFVKLAEA FGIKGMRVSH PDELQAAIAE
MLAFDGPVFL DAIVKRDENC YPMVPSGHSN AQMLGLPKDP TLDLDLAIAT CSSCGAKTLP
SHKFCPDCGA KL