Gene Synpcc7942_0073 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0073 
Symbol 
ID3773790 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp72000 
End bp73196 
Gene Length1197 bp 
Protein Length398 aa 
Translation table11 
GC content56% 
IMG OID637798479 
Product4-hydroxy-3-methylbut-2-enyl diphosphate reductase 
Protein accessionYP_399092 
Protein GI81298884 
COG category[M] Cell wall/membrane/envelope biogenesis
[I] Lipid transport and metabolism 
COG ID[COG0761] Penicillin tolerance protein 
TIGRFAM ID[TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACACAA AAGCTTTTAA GCGGGCCTTG CACCAGTCCG ATCGCTATAA CCGCAAAGGC 
TTTGGCAAAA CCACCGATGT CTCGGGCGCT CTTGAGTCGG CCTATCAAAG CGACTTGATT
CAAAGCTTGC GCCAGAATGG CTACCGTCTG CAGCGTGGCG AAATCACCAT TCGCCTCGCC
GAAGCTTTTG GCTTTTGCTG GGGCGTAGAG CGAGCCGTCG CGATCGCCTA CGAAACGCGT
CAGCACTTTC CCCAAGAGCG GATCTGGATT ACCAACGAGA TCATCCACAA TCCCTCGGTC
AACCAGCATC TACGCGAGAT GAGCGTCGAG TTTATTCCCT GTGAGCGGGG CGAGAAGGAT
TTTTCCGTCG TCGATCGCGG TGATGTCGTG ATTCTGCCGG CCTTTGGGGC CAGCGTGCAG
GAAATGCAGC TGCTCGATGA GAAAGGCTGC CATATCGTCG ACACCACCTG CCCTTGGGTT
TCCAAGGTCT GGAACACCGT CGAAAAACAT AAGCGCGGTG CTCACACTTC AATCATTCAC
GGCAAGTACA ACCACGAAGA GACGGTCGCC ACCAGCTCCT TTGCCGAAAC TTATCTGGTT
GTGCTGAATC TGGAGCAAGC GCAGTACGTC TGCGACTACA TCCTTAACGG TGGCGATCGC
GACGAGTTTA TGACGCGCTT TGGCAAGGCT TGCTCGGCCG GTTTTGACCC CGATCGCGAT
CTGGAGCGGA TCGGCATTGC CAACCAGACA ACGATGTTGA AGAGCGAAAC CGAAGCAATC
GGCAAACTAT TTGAACGGAC GCTGCTGAAG AAGTACGGCC CCCAAGCGCT CAACGATCAC
TTTTTGGCCT TCAACACCAT CTGCGATGCC ACCCAAGAGC GCCAAGACGC GATGTTCCAA
CTGGTTGAGG AACCGCTGGA TTTGATCGTG GTGATCGGTG GCTTTAACTC CTCCAACACC
ACTCACTTGC AAGAAATTGC GATCGAGCGC CAGATTCCCT CCTTCCATAT CGACGCGGCA
GAACGGATTG GCCCCGGCAA CCGGATCGAG CACAAACCGC TCCACACGGA CCTGACCACG
ACAGAGCCCT GGCTACCGGC GGGCCCGCTG ACCATTGGCA TCACCTCCGG GGCTTCAACC
CCCGACAAAG TGGTGGAGGA CGTGATTGAG CGACTCTTTG ATCTGCAGCG GTCCTAG
 
Protein sequence
MDTKAFKRAL HQSDRYNRKG FGKTTDVSGA LESAYQSDLI QSLRQNGYRL QRGEITIRLA 
EAFGFCWGVE RAVAIAYETR QHFPQERIWI TNEIIHNPSV NQHLREMSVE FIPCERGEKD
FSVVDRGDVV ILPAFGASVQ EMQLLDEKGC HIVDTTCPWV SKVWNTVEKH KRGAHTSIIH
GKYNHEETVA TSSFAETYLV VLNLEQAQYV CDYILNGGDR DEFMTRFGKA CSAGFDPDRD
LERIGIANQT TMLKSETEAI GKLFERTLLK KYGPQALNDH FLAFNTICDA TQERQDAMFQ
LVEEPLDLIV VIGGFNSSNT THLQEIAIER QIPSFHIDAA ERIGPGNRIE HKPLHTDLTT
TEPWLPAGPL TIGITSGAST PDKVVEDVIE RLFDLQRS