Gene Synpcc7942_0071 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0071 
Symbol 
ID3773788 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp69940 
End bp71139 
Gene Length1200 bp 
Protein Length399 aa 
Translation table11 
GC content60% 
IMG OID637798477 
Productpleiotropic regulatory protein-like 
Protein accessionYP_399090 
Protein GI81298882 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.237821 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGCTCTT CTTCAGAGTG TCCGGTGACG TCTATCCCCG CCTTTAATCT GACTGAGCAG 
TACCGCCGTA TCGGTGCTGA GCTAGAAACT GCGACAGCCA AGGTCTTAGC CTCGGGGGGC
TACATCGGCG GACAGACTGT TGCGGACTTT GAAGCGGCTT TTGCAGCGGC CATGGGTGTG
ACGGAAGCCG TGGGCTGCAA TTCGGGCACC GATGCGCTGC ATCTAGCACT GCGGGCATTA
GACATCGGGC CTGGGGACGA AGTCATCACT TCGCCGTTTA CCTTTTTTGC CTCTGCAGAA
GCGATTAGTT TGGCGGGGGC CACACCCGTC CTAGTCGACA TCGAACCCCA GTTCTTCAAC
CTCGACTATC GCCAGATCGA AGCAGCGATT ACCCCGCGCA CCAAGGCGAT TATTCCCGTT
CATCTGTTCG GCCATCCGGC GGCGATGTCG GAGATTATGG CGATTGCCCG AGCCCACAAT
CTGCGCGTGA TTGAGGATTG TGCCCAAGCG ACGGGAGCAA CTTGGCAGGG TCAGCCGGTT
GGCAGCTTTG GCGACTGTGG CTGCTTTAGC TTCTATCCGA CCAAAAATTT GGGGGCCTGC
GGCGATGGCG GCCTCGTCAC AACCAAGAAT CCTGAAGTGG CCGATCGCCT GCGATCGCTG
CGTCAGCATG GCATGCGGGT GCGCTACTAC CACGATGAGA TCGGCCTGAA TAGCCGTTTG
GATGCGCTGC AGGCGGTGAT TCTCTCGATT AAGCTGCGCT ACTTGGATGA GTGGAATCAG
CAGCGCCAAG CGATCGCGCA GCGCTATGGC GAAGCGATCG CCGCGATTCC CGGTCTGGTC
GCCCCCAGCG TGCACGCCGA TGCCGTCCAT GTCTGGCACC AATACACGGT GCGGGTGCAG
GCCTGTGGCG ATCGCAGCCG CTGTGTCAGT CATCCCTGCG ATCGCCAAGG ACTTTGCCGC
GACTGGCTGC AACAACAACT GCAAGCCCAA GGCATTGGCT CGATGATCTA CTACCCCGTG
CCTGTGCATC TGCAGCAGGC CTACAGCCAG TTAGGCTACA AGACTGGCGA CTTCCCTGAA
GCCGAGCGTG CCGCCCAAGA AGTCCTGTCG CTGCCGATGT TCCCGGAACT CAACGAGGAT
GATCAGGCTC GGGTGATCAC GGCTCTGAAG GATCTGGCGA TCGCAGCCGT CCAGTCCTAG
 
Protein sequence
MCSSSECPVT SIPAFNLTEQ YRRIGAELET ATAKVLASGG YIGGQTVADF EAAFAAAMGV 
TEAVGCNSGT DALHLALRAL DIGPGDEVIT SPFTFFASAE AISLAGATPV LVDIEPQFFN
LDYRQIEAAI TPRTKAIIPV HLFGHPAAMS EIMAIARAHN LRVIEDCAQA TGATWQGQPV
GSFGDCGCFS FYPTKNLGAC GDGGLVTTKN PEVADRLRSL RQHGMRVRYY HDEIGLNSRL
DALQAVILSI KLRYLDEWNQ QRQAIAQRYG EAIAAIPGLV APSVHADAVH VWHQYTVRVQ
ACGDRSRCVS HPCDRQGLCR DWLQQQLQAQ GIGSMIYYPV PVHLQQAYSQ LGYKTGDFPE
AERAAQEVLS LPMFPELNED DQARVITALK DLAIAAVQS