Gene Synpcc7942_0062 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0062 
Symbol 
ID3773779 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp62469 
End bp63242 
Gene Length774 bp 
Protein Length257 aa 
Translation table11 
GC content44% 
IMG OID637798468 
Productglucose-1-phosphate cytidylyltransferase 
Protein accessionYP_399081 
Protein GI81298873 
COG category[M] Cell wall/membrane/envelope biogenesis
[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1208] Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) 
TIGRFAM ID[TIGR02623] glucose-1-phosphate cytidylyltransferase 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.191265 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCTG TAATTTTGGC AGGTGGTCTT GGTACAAGAC TAAGTGAAGA GACTCACCTA 
AGACCTAAGC CAATGGTAGA AGTTGGTGGC AAACCAATTC TTTGGCATAT CCTTAAAATC
TATAGTCATT TTGGCATTCA GGAATTTATT ATTTGCTGTG GTTATAAGGG CTATTTAATT
AAAGATTATT TTGCCAACTA TTTTTTGTAT ACCAGTGATG TAACATTTCA TATGGATATT
GATAACCATA TGGAAGTTCA TCACCGAAAA AGCGAGCCGT GGAAAGTTAC GCTTGTAGAT
ACTGGCGAGA TGAGTCAGAC AGGAGGGCGG TTAGGCCGAG TTCGCCATTA TCTAAATGAC
GAAACCTTCT GTTTTACCTA TGGAGATGGT GTTGCAGATG TCAATATTCA TGCACTTGTT
CAACACCATC AAAAGGCAGA ATGTCAGGCA ACACTAACTG CTGTCCAGCC TCCTGGCCGT
TACGGTGCCC TGAGTCTGGA AGGTGATACG GTATTGCAGT TCCAAGAGAA ACCTGAGGGT
GATAACGCTT GGATTAATGG TGGCTTCTTC GTACTTGAAC CCAATGTTTT GGACTTGATT
GCAGACGATA GCTGTAGCTG GGAGGGAGAA ATTTTGCCTC AACTTGCTGC TGCTGGTCAG
CTCTCTGCTT ATCGGCACCG AGGTTTTTGG CAGCCAATGG ATACCTTGAG AGACCGGACT
CGTTTAGAGG AGCTATGGGC TAATAATCAG GCCCCCTGGA AGCTTTGGGA ATGA
 
Protein sequence
MKAVILAGGL GTRLSEETHL RPKPMVEVGG KPILWHILKI YSHFGIQEFI ICCGYKGYLI 
KDYFANYFLY TSDVTFHMDI DNHMEVHHRK SEPWKVTLVD TGEMSQTGGR LGRVRHYLND
ETFCFTYGDG VADVNIHALV QHHQKAECQA TLTAVQPPGR YGALSLEGDT VLQFQEKPEG
DNAWINGGFF VLEPNVLDLI ADDSCSWEGE ILPQLAAAGQ LSAYRHRGFW QPMDTLRDRT
RLEELWANNQ APWKLWE