Gene Synpcc7942_0058 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0058 
Symbol 
ID3773775 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp60301 
End bp60846 
Gene Length546 bp 
Protein Length181 aa 
Translation table11 
GC content53% 
IMG OID637798464 
ProductdTDP-4-dehydrorhamnose 3,5-epimerase 
Protein accessionYP_399077 
Protein GI81298869 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1898] dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes 
TIGRFAM ID[TIGR01221] dTDP-4-dehydrorhamnose 3,5-epimerase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.0432137 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAACTG AGTTACGAGC AACGGCGATC GCAGGCGTGC TGGAACTCAT TAGTCAGCCT 
TTTCAGGATC ATCGAGGTGC TTTTCTCAAT GCTTTTCGGG AACAAGAGCC TGCGTTTGCA
GAAGCTTGGG GAGACCGCAG GATTGCCCAA GTGAATCTGA GCCGAACTGA CAGAGTTGGA
GCGATTCGGG GGCTACATTT GCAAGCAGCA CCTCACAGTG AAGCAAAGCT CGTTCGTTGT
CTACGAGGAC GGGTGTGGGA TGTTGCAGTT GATCTGCGGC AGGATTCTGC AACCTATGGC
CAATGGCAAG CAGTAGAACT ATCTCCTGAG CAAGCTAATG CACTACTGAT TCCTGAAGGC
TGTGCTCATG GTTTCCAGGT GCTCGAAGCC AATAGCGAAT TACTCTATCT GCATTCTGGG
ACTTGGGTAC CAGAAGCCGA GACGGGCATT CGTTGGGACG ATCCTCAACT GGCGATCGCT
TGGCCGCTGC CGATGTCTGA ACTAAGCGAT CGCGATCGCG CTTTACCGTT TCTCTCGGGA
TTATGA
 
Protein sequence
MPTELRATAI AGVLELISQP FQDHRGAFLN AFREQEPAFA EAWGDRRIAQ VNLSRTDRVG 
AIRGLHLQAA PHSEAKLVRC LRGRVWDVAV DLRQDSATYG QWQAVELSPE QANALLIPEG
CAHGFQVLEA NSELLYLHSG TWVPEAETGI RWDDPQLAIA WPLPMSELSD RDRALPFLSG
L