Gene Synpcc7942_0054 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0054 
Symbol 
ID3775767 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp56423 
End bp57190 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content43% 
IMG OID637798460 
Producthypothetical protein 
Protein accessionYP_399073 
Protein GI81298865 
COG category[V] Defense mechanisms 
COG ID[COG3510] Cephalosporin hydroxylase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value7.0397e-05 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACTC CTCAAGAACT TGCATTTCAA GCTGAGAAGG CAACCTTAGT GGCACAGCAG 
GGCGAGAACC AAAAAGCTCG TGAGCTCGCC TTAGAATTTC TAAATGAAAC TGGAAATACA
AAATATGCCT ACCACTTTTC TTGGATAAAC AGGCCAATAG TACAGCTACC TCAAGACATT
GTCGCTTTTC AAGAAATTGT TTCCTCTGTT CAGCCAGACA TTATCATCGA AACAGGGGTT
GCCCATGGTG GCTCCCTCGC TTTGTCGGCT TCACTGCTAT GCCTGCTAGA TGTTATGGAA
GGCTTAAACC CGCGTCAGTC TAGCCGTAAA GTCATTGGTG TTGATATTGA GATTCGTCCC
CACAATCGCA AGGCATTAGA TGAGCATCCC TTACGATTCA AGATGGAGCT CATTGAAGGA
TCGTCGATCG ATCCCAAAAT TATTCAACAA GTAAAGAGTC ATGTACAAAG CTCAGAACGG
GTCTTAGTAT CGCTCGACTC AAACCATACT CATGAGCATG TGATGGCTGA GCTAAATGCC
TACGCTAGTT TAGTCACTGC AGGTAGCTAT TGTATCGTTT TTGATACTGT AATTGAAGAT
TTACCAGCAG GCTCTTTTCC CGACCGGGCT TGGGATGTAG GCAATAATCC TAAAACTGCT
GTGCACGAAT GGCTGAAGAG TCATCCTGAA TTTGCGATCG ATAAAGATAT TGATAACAAA
CTACTGATCA GTGTTGCTCC AGATGGATAT CTAAAACGGA TTTTTTGA
 
Protein sequence
MKTPQELAFQ AEKATLVAQQ GENQKARELA LEFLNETGNT KYAYHFSWIN RPIVQLPQDI 
VAFQEIVSSV QPDIIIETGV AHGGSLALSA SLLCLLDVME GLNPRQSSRK VIGVDIEIRP
HNRKALDEHP LRFKMELIEG SSIDPKIIQQ VKSHVQSSER VLVSLDSNHT HEHVMAELNA
YASLVTAGSY CIVFDTVIED LPAGSFPDRA WDVGNNPKTA VHEWLKSHPE FAIDKDIDNK
LLISVAPDGY LKRIF