Gene Synpcc7942_0053 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0053 
Symbol 
ID3775766 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp55204 
End bp56352 
Gene Length1149 bp 
Protein Length382 aa 
Translation table11 
GC content35% 
IMG OID637798459 
Producthypothetical protein 
Protein accessionYP_399072 
Protein GI81298864 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0463] Glycosyltransferases involved in cell wall biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value5.65511e-05 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAAAAT TTTCTATTAT TATTCCCACA CGAGAAAGGG TAGGAACCCT TCTCTATACT 
CTTCCTGCTT GCCTCAGAGT TGAGCGCGAC GATATTGAGT TCGTCGTTTG TGATAACTAT
AGTCAAGATG GCACAGCAGA TTATTTAAAG TCTATTCAAG ACCATCGCGT CAGGATATAT
CGTACTAATC AACGACTTTC TATGAAAGAT AACTTTGAGC ATGGGCTTGC GCGTGCTCAA
GGTGAATATA TTTGTTTTAT GGGCGATGAC GATCTAATTA TCCCAAGTCT TTTTCCACTT
GTCGAAAAAG AACTAGAAAA TGTAGAAACT GTTTGCTGGA ATCGCTGGGT TTATTATTGG
CCTGACTCCT ATGAATCACC TAATATGCTG ATAGTTAATA ATAATAATTT TAGTGTTATC
TTAAGCTCGT CAAGGGCTTT AGATTTTGCC CTGCGATACT TCTTAAACTA TCAGAACTTA
CCATCTCTCT ACAACTCATT TACCCATCGA AAAATCGTTC AAAGAGTTAT TAATTATAAC
TGTCTAAACT TAGAAACTGA AAAATTTTAT CCTCAAGATG CAATTTCTCC TGATGTATTT
TCTGCTTTGC AAATACTCAA ATTTACCAAT AGTTTTGCTC ATATAGGACT ACCTTTAACA
GTTTCAGGCA TATCTAGTTC AAGTAATGGA GCAGGAGTTA GGAATAACTC TGAGGAATCA
AAAAAGTTCA TTCAAGAGTT AAAAGTCGAG AAGCTTAGTG ATTTATTGCA CGTTTCTTTG
TCAGCATTAT TAACCCAGAA GATATCATAT TACATAACTA ATTTAAGTGA TTATATAAGC
TTTATCATAA ACTATATACC AGAAACCTTG CAAGAAGATA TATTTCTTGA TCTGATTGCA
TCTGGATGTA GAACATTATT TGATATCGGG GATATTGATG CCGATACAGC AACTCAGTTT
ATGGCTGGTT ATGATATTTC CCCGTGGGTG GTAAATGGGA GGCTCAACTT GATGGATCAG
GGATTTTATA CCTTGTTTAG AGTTCCTATG TTCAATAGAG TAGTTATTAA TGGTGATGAA
CATAGTCTTA GTAACTCTCT TAATGCATCA GTATTCTTAG ATGATTATTT CAGCTCTTTA
ATATATTGA
 
Protein sequence
MTKFSIIIPT RERVGTLLYT LPACLRVERD DIEFVVCDNY SQDGTADYLK SIQDHRVRIY 
RTNQRLSMKD NFEHGLARAQ GEYICFMGDD DLIIPSLFPL VEKELENVET VCWNRWVYYW
PDSYESPNML IVNNNNFSVI LSSSRALDFA LRYFLNYQNL PSLYNSFTHR KIVQRVINYN
CLNLETEKFY PQDAISPDVF SALQILKFTN SFAHIGLPLT VSGISSSSNG AGVRNNSEES
KKFIQELKVE KLSDLLHVSL SALLTQKISY YITNLSDYIS FIINYIPETL QEDIFLDLIA
SGCRTLFDIG DIDADTATQF MAGYDISPWV VNGRLNLMDQ GFYTLFRVPM FNRVVINGDE
HSLSNSLNAS VFLDDYFSSL IY