Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Synpcc7942_0048 |
Symbol | |
ID | 3775761 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus elongatus PCC 7942 |
Kingdom | Bacteria |
Replicon accession | NC_007604 |
Strand | - |
Start bp | 48927 |
End bp | 49361 |
Gene Length | 435 bp |
Protein Length | 144 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637798454 |
Product | pilin polypeptide PilA-like |
Protein accession | YP_399067 |
Protein GI | 81298859 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2165] Type II secretory pathway, pseudopilin PulG |
TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 0.335089 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGAAT CGCTCCGTCT ACGTTATCTG CAATATCTTG CCCAGCGTAA AGACGAACAA GGTGAAGAAG AAAAAGGTTT CACCCTTGTC GAGTTGCTGG TCGTTATCAT CATCGTTGGC ATCTTGGCAG CAGTTGCATT ACCGAACCTG TTGGCTCAAA CAGATAAAGC CTACGCCTCT GAAGGTAAAT CAGCAGTCGG TGCTGCTCTT CGTACCCTTA GTGCGGCGAC ACTAGACCCT AACTACGTCA CCAATGCGTC TTGTACACAG CTTGGTATTG GTAGCAGTGC AGGTAACTTT GACCTAACTT GTGGCAATGC TAGCCAAGTA ACGGCTGCGG GAAGTGGTAA AGCAGCGAAT ATTAACGTGA CTGGCACAAT CGGGACAGAC GGTAAGTTTA CCGTTATTGC AACCAAAGGC AGCGCAACTC TTTAA
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Protein sequence | MSESLRLRYL QYLAQRKDEQ GEEEKGFTLV ELLVVIIIVG ILAAVALPNL LAQTDKAYAS EGKSAVGAAL RTLSAATLDP NYVTNASCTQ LGIGSSAGNF DLTCGNASQV TAAGSGKAAN INVTGTIGTD GKFTVIATKG SATL
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