Gene PMT9312_1722 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMT9312_1722 
Symbol 
ID3766547 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9312 
KingdomBacteria 
Replicon accessionNC_007577 
Strand
Start bp1609076 
End bp1610110 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content36% 
IMG OID637798266 
Producttype II alternative sigma-70 family RNA polymerase sigma factor 
Protein accessionYP_398219 
Protein GI78780107 
COG category[K] Transcription 
COG ID[COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.733843 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTATTGT TTACAAAACA ACATTCAATT TTCATGTCTT CTGAAACATT AAGTGAGAAT 
AAATTAGCAA CAATATCAAG TTTAAAGGCT AGTAATGATG TTGACCTTGT TAGATCTTAT
TTAAGAGATA TAGGTAGAGT TCCTCTATTA TCTCACGAGC AAGAAATTAC TCTTGGTAGG
CAAGTCCAAG AATATATGCA AGTTGAAAGA GCAGAATTGG AAATTATTGA ATTAACAGGA
GATAAGCCAA GTATTGAGGA ATTATCTAGC AAATTAAATT TATCAATTCC AATAATCAAG
AAACGATTGC GAGCTGGACA AAGGGCTAAA GAAAGAATGG TTGCCGCTAA TTTAAGGTTG
GTAGTAAGTG TTGCAAAAAA ATATACTAAA AGAAATATGG AATTATTAGA TTTAATCCAG
GAGGGAACTA TAGGGCTTGT AAGGGGTGTA GAAAAATTTG ATCCAGCTAG AGGCTACAAG
TTTTCAACAT ATGCATACTG GTGGATTAGA CAAGGCATTA CTAGAGCGAT AGCTGAAAAA
AGTAGGGCAA TAAGGCTTCC AATTCACATA ACTGAAATGT TGAATAAGTT GAAAAAAGGT
CAAAGAGAGT TGAGTCAAGA AATGTCTAGA ACTCCAACAG TGAGTGAACT TGCTAAATAC
GTAGAGCTTC CTGAAGAAGA TGTTAAAGAT TTGATGTGCA AAGCTGGACA GCCAGTTAGT
CTGGAAACAA AAGTTGGCGA TGGTGAAGAC ACTGTCTTAT TAGATTTACT AGCAGGCGGC
GAGGATTTGC CAGACGAGCA AATAGAGATG GATTGTATGA GAGGCGATCT TCATTCTCTT
TTGCATCAAT TACCAGACCT GCAATGTAGA GTTTTAAGAA TGAGATATGG AATGGATGGT
GATGAGCCAA TGTCTCTTAC AGGTATAGGA AGAGTACTAG GAATAAGTAG GGATAGAGTA
AGAAACCTAG AACGAGATGG ATTAAGAGGT TTGAGAAGAC TTAGTGATAA TGTAGAAGCC
TATTTTGTTT CCTGA
 
Protein sequence
MVLFTKQHSI FMSSETLSEN KLATISSLKA SNDVDLVRSY LRDIGRVPLL SHEQEITLGR 
QVQEYMQVER AELEIIELTG DKPSIEELSS KLNLSIPIIK KRLRAGQRAK ERMVAANLRL
VVSVAKKYTK RNMELLDLIQ EGTIGLVRGV EKFDPARGYK FSTYAYWWIR QGITRAIAEK
SRAIRLPIHI TEMLNKLKKG QRELSQEMSR TPTVSELAKY VELPEEDVKD LMCKAGQPVS
LETKVGDGED TVLLDLLAGG EDLPDEQIEM DCMRGDLHSL LHQLPDLQCR VLRMRYGMDG
DEPMSLTGIG RVLGISRDRV RNLERDGLRG LRRLSDNVEA YFVS