Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PMT9312_1722 |
Symbol | |
ID | 3766547 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. MIT 9312 |
Kingdom | Bacteria |
Replicon accession | NC_007577 |
Strand | - |
Start bp | 1609076 |
End bp | 1610110 |
Gene Length | 1035 bp |
Protein Length | 344 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 637798266 |
Product | type II alternative sigma-70 family RNA polymerase sigma factor |
Protein accession | YP_398219 |
Protein GI | 78780107 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family [TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.733843 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTATTGT TTACAAAACA ACATTCAATT TTCATGTCTT CTGAAACATT AAGTGAGAAT AAATTAGCAA CAATATCAAG TTTAAAGGCT AGTAATGATG TTGACCTTGT TAGATCTTAT TTAAGAGATA TAGGTAGAGT TCCTCTATTA TCTCACGAGC AAGAAATTAC TCTTGGTAGG CAAGTCCAAG AATATATGCA AGTTGAAAGA GCAGAATTGG AAATTATTGA ATTAACAGGA GATAAGCCAA GTATTGAGGA ATTATCTAGC AAATTAAATT TATCAATTCC AATAATCAAG AAACGATTGC GAGCTGGACA AAGGGCTAAA GAAAGAATGG TTGCCGCTAA TTTAAGGTTG GTAGTAAGTG TTGCAAAAAA ATATACTAAA AGAAATATGG AATTATTAGA TTTAATCCAG GAGGGAACTA TAGGGCTTGT AAGGGGTGTA GAAAAATTTG ATCCAGCTAG AGGCTACAAG TTTTCAACAT ATGCATACTG GTGGATTAGA CAAGGCATTA CTAGAGCGAT AGCTGAAAAA AGTAGGGCAA TAAGGCTTCC AATTCACATA ACTGAAATGT TGAATAAGTT GAAAAAAGGT CAAAGAGAGT TGAGTCAAGA AATGTCTAGA ACTCCAACAG TGAGTGAACT TGCTAAATAC GTAGAGCTTC CTGAAGAAGA TGTTAAAGAT TTGATGTGCA AAGCTGGACA GCCAGTTAGT CTGGAAACAA AAGTTGGCGA TGGTGAAGAC ACTGTCTTAT TAGATTTACT AGCAGGCGGC GAGGATTTGC CAGACGAGCA AATAGAGATG GATTGTATGA GAGGCGATCT TCATTCTCTT TTGCATCAAT TACCAGACCT GCAATGTAGA GTTTTAAGAA TGAGATATGG AATGGATGGT GATGAGCCAA TGTCTCTTAC AGGTATAGGA AGAGTACTAG GAATAAGTAG GGATAGAGTA AGAAACCTAG AACGAGATGG ATTAAGAGGT TTGAGAAGAC TTAGTGATAA TGTAGAAGCC TATTTTGTTT CCTGA
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Protein sequence | MVLFTKQHSI FMSSETLSEN KLATISSLKA SNDVDLVRSY LRDIGRVPLL SHEQEITLGR QVQEYMQVER AELEIIELTG DKPSIEELSS KLNLSIPIIK KRLRAGQRAK ERMVAANLRL VVSVAKKYTK RNMELLDLIQ EGTIGLVRGV EKFDPARGYK FSTYAYWWIR QGITRAIAEK SRAIRLPIHI TEMLNKLKKG QRELSQEMSR TPTVSELAKY VELPEEDVKD LMCKAGQPVS LETKVGDGED TVLLDLLAGG EDLPDEQIEM DCMRGDLHSL LHQLPDLQCR VLRMRYGMDG DEPMSLTGIG RVLGISRDRV RNLERDGLRG LRRLSDNVEA YFVS
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