Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PMT9312_1374 |
Symbol | ispF |
ID | 3766186 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. MIT 9312 |
Kingdom | Bacteria |
Replicon accession | NC_007577 |
Strand | - |
Start bp | 1288084 |
End bp | 1288587 |
Gene Length | 504 bp |
Protein Length | 167 aa |
Translation table | 11 |
GC content | 31% |
IMG OID | 637797907 |
Product | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
Protein accession | YP_397870 |
Protein GI | 78779758 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0245] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
TIGRFAM ID | [TIGR00151] 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0160663 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACGATT TCACTCCAAA ATTTAGAATT GGTAATGGAT ATGATATTCA TAGATTAGTA ACAGGAAGAA AACTTATTAT AGGTGGAGTT AATTTAAAAC ATCCGGATAA TTTGGGGTTA GATGGTCATA GTGATGCAGA TGTGTTAACT CATTCAATAA TGGATGCATT ATTAGGAGCA TTGTCTCTAG GAGACATAGG AAAATATTTT CCTCCTTCAG ATGACAAATG GAAAGATGTA GATAGTCTAA TTTTGTTATC GAAGGTTATT GATTTAGTTA GAAAGCAAGG TTGGGAAATA AATAATATTG ATAGCGTTCT TGTTGCTGAA AGACCAAAAA TTAAACCATT TGTTGAAATA ATGAAAAAAA ATCTCTCTAA TACTCTAAAA ATAGATAATA GTTTTATTGG AATAAAAGCA ACTACGAATG AAAAGTTAGG ACCAGAAGGT AGAGAAGAAG GAATAAGTTG TCACTCTGTA GTTTTACTCG AGAAAAAAGA ATGA
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Protein sequence | MNDFTPKFRI GNGYDIHRLV TGRKLIIGGV NLKHPDNLGL DGHSDADVLT HSIMDALLGA LSLGDIGKYF PPSDDKWKDV DSLILLSKVI DLVRKQGWEI NNIDSVLVAE RPKIKPFVEI MKKNLSNTLK IDNSFIGIKA TTNEKLGPEG REEGISCHSV VLLEKKE
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