Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PMT9312_0912 |
Symbol | dapF |
ID | 3765714 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. MIT 9312 |
Kingdom | Bacteria |
Replicon accession | NC_007577 |
Strand | + |
Start bp | 845299 |
End bp | 846159 |
Gene Length | 861 bp |
Protein Length | 286 aa |
Translation table | 11 |
GC content | 29% |
IMG OID | 637797435 |
Product | diaminopimelate epimerase |
Protein accession | YP_397408 |
Protein GI | 78779296 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAAATA TAAATTTTGA AAAATATCAA GGTAACGGAA ATGATTTCGT AGTAATTGAT TCTAGAGGAA ATGATTTATA TAAAAATTAC AAGTCAAATA AAATATTTGA TATAAAACAA ATTTGCAACA GGCAATTTGG TATTGGAGCA GATGGTGTAA TTTTTATAGA AGAACCTAAT GAAGATAATT ATGCAAAAAT GATAATCTTT AATTCTGATG GCTCTGAAGC ACAAATGTGT GGAAACGGAA TTAGGTGTTT AGTTGAGTAT CTCCACGTAA ATGATTCAAT GAATAATAAA AATATAGAAT ATAAAATTGA GACTAAAGCA GGTTTAAAAA TTGCAAAATA TATAAATGAT GAAATTACAG TAAAAATGGG AGTTCCAATT TTAGAAAGTC AAAATATTCC AACAACAATT GAAAAAAAAA TCAATTCAAT TCCTTCACAC GAATTTATTG AGAAAAATTT CAATAATATG GGTTATGCCG TAGGAATGGG AAATCCTCAT TTAATATTCT TTGTAAAAGA CATAGAGTCA ATTGTTCTTT ACAGACTAGG TCCTATATTT GAAAAAAATG AATTATTTCC TGAAAAAACT AATGTACATT TTTGTCAAAT CATAAATAGA GATAATATCA AAGTAAAAGT ATGGGAAAGA GGTGCAGGAC CAACCTTAGC CTGTGGAACA GGTGCCTGTG CTATCCATGT AGCAGCTTAT AAATTAGGAC TTTGTAATCC ACAAACCATA GTAACTTTAC CAGGAGGTAA TCTTAAAATT GATTGGTCAA AAGACGATTT TGAAGTCATG ATGACCGGTA ATGCTAAAAA GGTTTTCTCA GGATCAATGT TAGTAAATTA A
|
Protein sequence | MKNINFEKYQ GNGNDFVVID SRGNDLYKNY KSNKIFDIKQ ICNRQFGIGA DGVIFIEEPN EDNYAKMIIF NSDGSEAQMC GNGIRCLVEY LHVNDSMNNK NIEYKIETKA GLKIAKYIND EITVKMGVPI LESQNIPTTI EKKINSIPSH EFIEKNFNNM GYAVGMGNPH LIFFVKDIES IVLYRLGPIF EKNELFPEKT NVHFCQIINR DNIKVKVWER GAGPTLACGT GACAIHVAAY KLGLCNPQTI VTLPGGNLKI DWSKDDFEVM MTGNAKKVFS GSMLVN
|
| |