| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMT9312_0497 |
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| Symbol | |
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| ID | 3765296 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. MIT 9312 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007577 |
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| Strand | - |
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| Start bp | 464827 |
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| End bp | 466008 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 637797017 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_396994 |
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| Protein GI | 78778882 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.508169 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTGTCCAG TAGCAGCAGA TTCAAAGAAT TCCAAGCCTA GCTCAAAAAA AAAGATTAAC
AAAAAAATTA ATTCCAATTT AGAAACAGTG GTTGAAGAAA ATAGTAATAT CAATAGTGAA
AATTTAAAGG AATCTTCTTA TTCAAACGAA AGCAGCTTAG AAAACAATAA TGAATTTAGT
GATTCTGAAG ATGCAGATAA GGGCCTTGGG AACATAAAGC TTGGGCCAAA AGGTATATAC
ACCGAAGATT CAATAAGAGT TTACCTGCAA GAAATTGGAA GAATTAGACT TTTAAGACCA
GATGAAGAAA TTGAACTTGC AAGAAAAATT GCTGACTTAC TCCAATTAGA AGAACTGGCA
ACTCAATATG AGTCAGAAAA AGGCCATTTC CCTTCTGTTA GAGAATGGGC AGAATTAATA
GATATGCCTC TTTCCAAATT TAGAAGAAGA CTACTTTTAG GAAGAAGAGC TAAAGAAAAA
ATGGTTCAAT CAAATTTAAG ATTAGTTGTT TCCATTGCTA AAAAATATAT GAATAGAGGT
TTATCATTCC AAGATTTAAT ACAAGAAGGA AGTTTGGGTT TGATCAGGGC AGCAGAAAAA
TTTGACCATG AAAAAGGTTA TAAATTCTCT ACTTATGCTA CTTGGTGGAT TCGCCAAGCC
ATTACTAGAG CAATCGCAGA CCAAAGTAGG ACTATTAGAT TGCCAGTTCA TTTATACGAG
ACAATATCCA GAATTAAAAA AACCACAAAA GTTCTCAGCC AAGAATTCGG AAGGAAACCC
AGTGAAGAAG AAATAGCTGA GAGTATGGAA ATGACAATTG AAAAATTAAG ATTTATAGCT
AAAAGTGCTC AGTTACCTAT TTCTTTAGAA ACTCCAATAG GCAAAGAAGA AGACTCAAGA
CTTGGAGACT TTATAGAGGC TGATATAGAA AATCCAGAGC AAGATGTGTC TAAAACTTTA
TTAAGAGAAG ATTTAGAGGG AGTCCTAGCA ACTCTAAGTC CAAGGGAAAG AGATGTTCTT
AGATTGAGAT ACGGAATTGA TGATGGAAGA ATGAAAACTC TTGAAGAAAT TGGACAGATA
TTTGATGTAA CTCGAGAAAG AATTAGACAA ATAGAAGCAA AAGCCCTAAG AAAACTTAGA
CATCCAAATC GAAATGGGGT TTTAAAAGAA TATATAAAAT AA
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| Protein sequence | MCPVAADSKN SKPSSKKKIN KKINSNLETV VEENSNINSE NLKESSYSNE SSLENNNEFS
DSEDADKGLG NIKLGPKGIY TEDSIRVYLQ EIGRIRLLRP DEEIELARKI ADLLQLEELA
TQYESEKGHF PSVREWAELI DMPLSKFRRR LLLGRRAKEK MVQSNLRLVV SIAKKYMNRG
LSFQDLIQEG SLGLIRAAEK FDHEKGYKFS TYATWWIRQA ITRAIADQSR TIRLPVHLYE
TISRIKKTTK VLSQEFGRKP SEEEIAESME MTIEKLRFIA KSAQLPISLE TPIGKEEDSR
LGDFIEADIE NPEQDVSKTL LREDLEGVLA TLSPRERDVL RLRYGIDDGR MKTLEEIGQI
FDVTRERIRQ IEAKALRKLR HPNRNGVLKE YIK
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