Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PMT9312_0282 |
Symbol | |
ID | 3765070 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Prochlorococcus marinus str. MIT 9312 |
Kingdom | Bacteria |
Replicon accession | NC_007577 |
Strand | - |
Start bp | 270054 |
End bp | 271538 |
Gene Length | 1485 bp |
Protein Length | 494 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 637796791 |
Product | retinal pigment epithelial membrane protein |
Protein accession | YP_396779 |
Protein GI | 78778667 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3670] Lignostilbene-alpha,beta-dioxygenase and related enzymes |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0182948 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGACTAATT TACAAGATAA AAAAATTGAT AAATTTAAAA GTTTTAATAA AGAAGATTGG TCAAGTGCGT ATCAAAATGT AGAAAAGGAG CTAACCAAGG AGCCTCTAAA AATTAGCAAA GGTAATAATA TAAAAAATTT AAATGGAACA TTATTAAGAA ATGGACCAGG AATATTAGAG AGAGGTGGAC AATGGGTTCA TCATCCATTT GATGGTGATG GAATGATAAC TTCCATAAAA TTCGAAAATG GTCAGCCATT TTTAACAAAT AGATTTGTTA AAACTAAAGG CTATTTGGAA GAAGAAAAAA TAAATAAATT TATTTATAGA GGTGTATTTG GGACACAAAA AAATGGAGGA ATTCTAAATA ATGCATTAGA TCTAAAATTC AAGAATATCG CTAATACTCA TGTTGTTAAA TTAGGAGATG AAATTCTCGC ATTATGGGAA GCAGCCGGTC CACATGCAAT GGATCCTGAT AGTCTTAACA CTATTGGTTT AACAACATTA AAAGGGGTAC TCAAGCCTAA CGAAGCATTT AGTGCCCATC CCAAAACAGA CCTAAATTCA AATGCATCTT CAGAACTTTT AGTCACTTTT GGAGTACAAA CCGGGCCAAA AAGTACCATT AGATTAATGG AATTTAATAA TGCTGGTACA AATTCTGGAG AGCTCATTTT CGACAGAAAA GATACCCTTA ATGGCTTTGC ATTCCTTCAT GATTTCGCAA TTACAACTAA TTGGGCAATA TTTTTACAGA ATGCTATTGA TTTCAATCCT CTTCCATTTG TAATGGGCCA AAGAGGAGCA GCTCAATGTC TAAAGTCAAA CCCAAATAAA AAGGCAAAGT TTTTTATCAT CCCCAGAGAA AGTGGATTAT TTAGAGGTCA GCCACCGCTA ACAATAGATG CTCCAGAAGG ATTCGTTTTT CATCATGTAA ATGCATTTGA AAAAGATTCC AAAATCATAT TAGATAGTAT TTTTTATGAT GATTTTCCAT CAGTTGGTCC AGACGAGAAT TTTAGGGATA TTGACTTTGA TAAATATCCA GAAGGAAAAC TGAAAAGATC AATTATCGAT CTAAAGAAAA AAACTAGTGA ACTTGAAACT TTAAGTGAAC AATGTTGTGA ATTTGCTGTT GTTAATCCTA AAAACTTAGG ATTAACAGCA ACTTTTAGTT GGATGGCAAG CACATCTCAA AAGATGGGGA ACGCTCCACT GCAAGCAATA AAAAAAATAA ATTTAACATC TAAGGAAGAG ATTTCTTGGT CAGCTGGTCC AAGTGGATTC GTAAGTGAAC CAATCATGGT TCCATCAGAA AACTCCTCTA AGGAAGATGA GGGATTTTTG TTTATACTTT TATGGAACGG AGAAAGAAGA GGAAGCGATT TAGTGATATT AGATGCAAAA GACTTAAAAG AATTAGCTGT TTATGAATTA CCCATTTCAA TTCCTCATGG CCTTCATGGA TCTTGGGTTA ATTGA
|
Protein sequence | MTNLQDKKID KFKSFNKEDW SSAYQNVEKE LTKEPLKISK GNNIKNLNGT LLRNGPGILE RGGQWVHHPF DGDGMITSIK FENGQPFLTN RFVKTKGYLE EEKINKFIYR GVFGTQKNGG ILNNALDLKF KNIANTHVVK LGDEILALWE AAGPHAMDPD SLNTIGLTTL KGVLKPNEAF SAHPKTDLNS NASSELLVTF GVQTGPKSTI RLMEFNNAGT NSGELIFDRK DTLNGFAFLH DFAITTNWAI FLQNAIDFNP LPFVMGQRGA AQCLKSNPNK KAKFFIIPRE SGLFRGQPPL TIDAPEGFVF HHVNAFEKDS KIILDSIFYD DFPSVGPDEN FRDIDFDKYP EGKLKRSIID LKKKTSELET LSEQCCEFAV VNPKNLGLTA TFSWMASTSQ KMGNAPLQAI KKINLTSKEE ISWSAGPSGF VSEPIMVPSE NSSKEDEGFL FILLWNGERR GSDLVILDAK DLKELAVYEL PISIPHGLHG SWVN
|
| |