Gene PMT9312_0195 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMT9312_0195 
Symbol 
ID3764980 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9312 
KingdomBacteria 
Replicon accessionNC_007577 
Strand
Start bp187446 
End bp188405 
Gene Length960 bp 
Protein Length319 aa 
Translation table11 
GC content34% 
IMG OID637796702 
Productputative pseudouridylate synthase specific to ribosomal large subunit 
Protein accessionYP_396693 
Protein GI78778581 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0564] Pseudouridylate synthases, 23S RNA-specific 
TIGRFAM ID[TIGR00005] pseudouridine synthase, RluA family 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0799995 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATTAA ATAATCAAAA TTCTTTCGGC ATTGGAGAAG GCGAGCGTAT AGAAATTATT 
TATGAGCTAC CTCTTCCTAT GAGGCTAGAC AGATGGTTGG TAAGTAAAAG GCCAGAACAA
AGTAGAGCAA GAATTCAACA TTTTATAAAT TCAGGTTTAG TACTTGTAAA CTATAAGACC
GCGAAAGCAA AGACCCCATT AAAAAATGGC GACAATGTTC AAATATGGAT GCCTCCTCCA
GAACCTCTTA TTTATTTGAA ACCTGAAAAA ATGGATTTAA ATATCCTCTT TGAAGACAAG
CACATTATAG TAATCAATAA ACAATCAGGA CTAATTGTTC ATCCAGCCCC TGGACACAAA
TCTGGAACTT TAGTGAATGG ATTACTTTTT CACTGTAAAG ATCTACCTGG AATTAATGGG
AAACTAAGAC CTGGGATTGT TCACAGATTA GATAAAGATA CCTCCGGATG TATGGTGGTT
GCAAAAAGCC AAGAGGCATT AGTAAATCTC CAGAAACAAA TTAAAGAAAA AATAGCATCA
CGCGAATATA TTGCAGTCAT TCATGGAGCA CCTAATTCTG AAGAAGGCCA AATAGTGGGA
CACATTGGCA GAGATAAATT AAATAGATTG AAATATAAAG TAGTTGAAGA AACTACAGGA
AGGTATGCCT GTACCTATTG GAAATTAGAA GAAAGATTTG GCAATTACTC ATTAATGAGT
TTCAAACTAG ATACGGGGCG AACGCATCAA ATAAGAGTTC ATTGCGCTCA CATTAATCAT
CCAATTGTAG GTGATCCGTT ATATGGAAGA TGTAAAAAAC TACCATGTCA ATTAGATGGC
CAAGCTTTAC ACGCTATAAA GCTTGGACTT ATACATCCAA TAAATGGTAA AGAAATGATA
TTTGAATCAG AATTACCATT AGATTTTCAA AAATTACTAA GAGTTCTTAA AGTTAAATAA
 
Protein sequence
MELNNQNSFG IGEGERIEII YELPLPMRLD RWLVSKRPEQ SRARIQHFIN SGLVLVNYKT 
AKAKTPLKNG DNVQIWMPPP EPLIYLKPEK MDLNILFEDK HIIVINKQSG LIVHPAPGHK
SGTLVNGLLF HCKDLPGING KLRPGIVHRL DKDTSGCMVV AKSQEALVNL QKQIKEKIAS
REYIAVIHGA PNSEEGQIVG HIGRDKLNRL KYKVVEETTG RYACTYWKLE ERFGNYSLMS
FKLDTGRTHQ IRVHCAHINH PIVGDPLYGR CKKLPCQLDG QALHAIKLGL IHPINGKEMI
FESELPLDFQ KLLRVLKVK