Gene PMT9312_0038 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMT9312_0038 
Symbol 
ID3764819 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9312 
KingdomBacteria 
Replicon accessionNC_007577 
Strand
Start bp36581 
End bp38065 
Gene Length1485 bp 
Protein Length494 aa 
Translation table11 
GC content28% 
IMG OID637796541 
ProductTPR repeat-containing protein 
Protein accessionYP_396535 
Protein GI78778423 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGGTT TTGGCGAAAA GAACCAATTA AAGAAAATAA AAACACCAAA AAATGCAGAG 
ATACTAGATA GCGATCAATT GATTAAAAAA GCATTCACAC TGCAAGCACA AGGAAGGACA
CTAGAAGCAG CAAAACACTA TGCATATCTT ATTAAACATG GAATAAAAGA CTATAGAGTT
TTTTCAAATT ATGGAATATT CCTAAACGAA ATCGGAAAAC ACAAAGAAGC AGAATTAGAA
CTTAAAAAAG CAATTTCTTT AAATCCTAAA TATGCAAATG CTTACTACAA TCTGGCAGTT
TTATTTATTG GTCAAGGAAA TTTGGGGAAA GCAGAATTAG AACTTAAAAA AGCAATAAAA
CTTAAATCAG ACTTTGCTAT TGCTTACTAT AATCTTGGAT TTATTTTAAA AGATCTGGGT
AGATTAAAAG AGGCAGATTC ATATAATCAA AAAGCAGTTG AAATAGATCC TCACTTGACT
GATGCATATT TATCATTATC AACTATGTAT TCTGGTGATA AAACTCCAAA ATGGCACAAT
CAACTTTTTT CTGAAAGTCT TATAAAAAAC AAAAATAATA GAGAATTAAT AAATATTTTT
TTCGCAAGAT CAAATATTTT TCATAGAGAA GGAAAATATC AAGAAAGCGC TGAGAATCTT
ATTAATGCAA ATAATATCAA ACTTAGATTG AATAAATCTG AAGCAAATTT ATTAATCAAT
AAAACTAAAA AGTTGAAAAT ATCCTCAGAT AATTATGAAA GAAAAAATAA AGCATTTGGA
AATTATCCAA TGTCTATTTT TATAGTAGGA CTTCCTAGAT GTGGTTCTAC CCTGGTTGAA
TCAATCATAA GTTTGAATTC TCATGTAAGA GATCTTGGAG AAGTCAATAT CTTTGAAAAA
TCATATAGAG AATATAAAGA ATCTGAAAAA AAAACAGACC TTAGTGAAAT ATATTGGAAA
AAATTAGAAA TAACCAAAAA TAAAAGATCC ACAACAAATA AATGGTTATT TAATTATCAA
TATGCAGGCA TAATTGCACA AGCAATTCCT AATGCAAAAA TAATACATTG CTATAGAAAT
CCTTTAGATA ATATCCTTTC TATGTATAGA GCACATTTCG CAACAGGGAA TAATTTCTCT
TCAAGTTTGG TTGATTCTGT TGCAGTTTAT TCTGATCAAG AGGAGATCAT GAAAATATAC
AAAAAAGAAT TTAAAAATCA TATATATGAA TTAAATTACG ATAAATTAGT GACTCATCCT
TCAGAAGAGA TAAAATCATT AATTCTTTGG TTAGGTTGGA AATGGAATGA TTTATATTTA
TCGCCACATT TAAATAATCG TAAAGTCTCA ACAAGAAGCA ATGTTGAGGT TCGTTCACCA
ATCACTACAA AATCTTTAGG AGGATGGAAA AACTATAAAG AGATGCTTAG ACCTGCAATG
GAAATCATTA CTCAAAAGGA TCAATATAAA GACCTAAAGT ATTAA
 
Protein sequence
MKGFGEKNQL KKIKTPKNAE ILDSDQLIKK AFTLQAQGRT LEAAKHYAYL IKHGIKDYRV 
FSNYGIFLNE IGKHKEAELE LKKAISLNPK YANAYYNLAV LFIGQGNLGK AELELKKAIK
LKSDFAIAYY NLGFILKDLG RLKEADSYNQ KAVEIDPHLT DAYLSLSTMY SGDKTPKWHN
QLFSESLIKN KNNRELINIF FARSNIFHRE GKYQESAENL INANNIKLRL NKSEANLLIN
KTKKLKISSD NYERKNKAFG NYPMSIFIVG LPRCGSTLVE SIISLNSHVR DLGEVNIFEK
SYREYKESEK KTDLSEIYWK KLEITKNKRS TTNKWLFNYQ YAGIIAQAIP NAKIIHCYRN
PLDNILSMYR AHFATGNNFS SSLVDSVAVY SDQEEIMKIY KKEFKNHIYE LNYDKLVTHP
SEEIKSLILW LGWKWNDLYL SPHLNNRKVS TRSNVEVRSP ITTKSLGGWK NYKEMLRPAM
EIITQKDQYK DLKY