Gene PMT9312_0013 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPMT9312_0013 
Symbol 
ID3764794 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameProchlorococcus marinus str. MIT 9312 
KingdomBacteria 
Replicon accessionNC_007577 
Strand
Start bp16075 
End bp16743 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content49% 
IMG OID637796516 
ProductRNA-binding region RNP-1 (RNA recognition motif) 
Protein accessionYP_396510 
Protein GI78778398 
COG category[R] General function prediction only 
COG ID[COG0724] RNA-binding proteins (RRM domain) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAGTATTT TTGTTGGCAA TTTGCCTTTC CGCGCAGAGC GAGAAGATGT TTTACAGTTG 
TTTGCCCCTT TTGGTGAGGT TTTAAATTGT TCTCTTCCTC TTGAAAGAGA TACTGGAAGA
AAAAGAGGAT TTGCATTCGT TGAGATGGCA GATGAAGCAA TTGAATCAGC AGCTATTGAT
GGTTTGCAAG GTACAGAGCT TATGGGTAGA CCATTAAGAA TTAATAAGGC AGAGCCAAGA
GGTTCTGGAG GGTCTCGTAG AGGAGGAAGA GGCGGTGGAA ATAATGGCGG CGGCTATGGC
GGTGGCGGCT ACGGCGGTGG AAATAATGGC GGTGGCTATG GCGGTGGCGG TGGCGGTGGC
GGTGGCGGCT ACGGCGGTGG AAATAATGGC GGCGGCTACG GCGGTGGCGG TGGTGGCTAC
GGCGGTGGAA ATAATGGCGG CGGCTACGGC GGTGGCGGTG GTGGCTATGG CGGTGGAAAT
AATGGCGGCG GCTATGGCGG TGGTAATCCT GAACCTAAAA CTTCTTATAC GAATAACTCC
TCGGGAGCTG AAGGTTGGGA AGATAGAAGT TATGGAAACT CTTCTGAAAA CTCTGAATAT
GAAAGTGGCA GAAGTAGGAG AAAAAGAGGA GTTTCAAACG AGAGTAATTT ATCAAATGAA
GAGAATTAA
 
Protein sequence
MSIFVGNLPF RAEREDVLQL FAPFGEVLNC SLPLERDTGR KRGFAFVEMA DEAIESAAID 
GLQGTELMGR PLRINKAEPR GSGGSRRGGR GGGNNGGGYG GGGYGGGNNG GGYGGGGGGG
GGGYGGGNNG GGYGGGGGGY GGGNNGGGYG GGGGGYGGGN NGGGYGGGNP EPKTSYTNNS
SGAEGWEDRS YGNSSENSEY ESGRSRRKRG VSNESNLSNE EN