| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_2197 |
|---|
| Symbol | |
|---|
| ID | 3762119 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | - |
|---|
| Start bp | 2423640 |
|---|
| End bp | 2425295 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637786946 |
|---|
| Product | 60 kDa inner membrane insertion protein |
|---|
| Protein accession | YP_392459 |
|---|
| Protein GI | 78486534 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0706] Preprotein translocase subunit YidC |
|---|
| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.297594 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATATGA GATCTTTCTG GTGGTTAGCA CTGGCATTTA CATTACTCTG GATTTGGATG
CAATGGACGC AGTTTCAGCA TAAAGCGTCA TTGCCGCCTC AAACAGCCGC TGTGACACAG
CAAACCGATA AAGGGATGGA AACCCCTGAG ATTAATCCGG ATGTTCCAAC CGCACATCAG
ACGATGGAAG ATGTTCCGAC CGCCAAAGCC AAAATTAAAC AGGCGCAGCG TATTTCAGTG
AAAACCGATG TACTGGATAT CGTTATTGAT ACGCAAGGTG GTGATATTCG AGATGTGAAG
TTACTGAAAT ACGCGGCGAC GGATGATCGT TCTCAACCAT TCCGTTTGAT GGGCGACACC
GGGCAAATGA TGTATGTGGC GCAAAACGGG ATTGCCCTGC AATCCAAAGC GGTTTTGCCG
GCCCCTACCC ATAAGTCGTT ATATCAAGCA TCTCAAACAC ATTATGAAAT GACGGGCGAT
ACGCTGACGG TTCCGCTGAC GTGGGAACAA GATGGTGTGA AAGTCACGAA AACGTATGTC
TTTACCAAAG GAAAATACGT AATCGGATTA AACTATAAAA TCGATAACAC CACACAAAAA
GAATGGGCCG GTGGCCTTTA TTCTCAGTTA GTCCGTAATA CTTATGATCC AGATCATAAT
GCCATGATGT ATACCTACAC TGGACCGGTT TTGTATGATG GTCATGCTGA AAGCAAATAC
AATAAACATT CGTTTGATGA TTTGAGCAAG CAACCGATCC AAGGCATACA AACCACGGGT
GGTTGGGCCG CAATGATTCA GCATTACTTC ATGTCAGCCG TAATCCCGGA TCAAGAAAGT
CAGAACCGCT ATTATGCGAA GCCATTGAAT GATGGTGAGT ACGTTGCCGG TGTGGTCGAA
CCGATGGAAA CCGTTGCCGC TGGTCAGTCA CAAACACTGT CATCGGAATT GTACATTGGG
CCGATTATTC AGGATAACCT GGAAAAAATT GCGCCTGGCT TAGAACTGAC CGTTGATTAT
GGCGTTTTAA CCATTATTGC CGAGCCTATT TTCTGGGTGT TGGAAAAAAT TCACGCTTTG
GTGGGTAACT GGGGTTGGTC AATCATCTTA TTAACGGTGT TGATCAAACT GTTGTTCTAC
AAACTGTCTG AAACGTCTTA CCGTTCCATG GCACGTTTGA AGAAGTTCCA GCCAAAGCTA
AAACAGCTGA AAGAAAACTA TGGCGATGAC AAAGTCATCT TCCAACAAAA AATGATGAAG
CTGTATAAAG AAGAAAAGAT TAACCCGCTG GGTGGGTGTT TACCGATTCT GGTTCAAATG
CCGGTTTTCA TCGCGCTTTA TTGGGTACTG CTTTATTCGG CTGAAATGCG TCAAGCACCT
TGGATTCTAT GGATCGATGA TTTATCGGTT AAAGATCCGT ATTTCATCTT GCCAGTCCTG
ATGGGGATTT CAATGTGGGT ACAACAAAAA TTGAACCCTT CCGCGATGAT GGATGAAATG
CAACAAAAGG TCATGAAAGC ATTGCCTTTT ATTTTCACGA TCTTCTTCAT GTTCTTCCCG
GCCGGTTTGG TACTTTACTG GGTAGTGAAC AACATTCTAT CGGTGTCACA GCAATGGTAC
ATCACCCGTA AAATTGAAGC CGGTGAAGAG AAATAA
|
|---|
| Protein sequence | MNMRSFWWLA LAFTLLWIWM QWTQFQHKAS LPPQTAAVTQ QTDKGMETPE INPDVPTAHQ
TMEDVPTAKA KIKQAQRISV KTDVLDIVID TQGGDIRDVK LLKYAATDDR SQPFRLMGDT
GQMMYVAQNG IALQSKAVLP APTHKSLYQA SQTHYEMTGD TLTVPLTWEQ DGVKVTKTYV
FTKGKYVIGL NYKIDNTTQK EWAGGLYSQL VRNTYDPDHN AMMYTYTGPV LYDGHAESKY
NKHSFDDLSK QPIQGIQTTG GWAAMIQHYF MSAVIPDQES QNRYYAKPLN DGEYVAGVVE
PMETVAAGQS QTLSSELYIG PIIQDNLEKI APGLELTVDY GVLTIIAEPI FWVLEKIHAL
VGNWGWSIIL LTVLIKLLFY KLSETSYRSM ARLKKFQPKL KQLKENYGDD KVIFQQKMMK
LYKEEKINPL GGCLPILVQM PVFIALYWVL LYSAEMRQAP WILWIDDLSV KDPYFILPVL
MGISMWVQQK LNPSAMMDEM QQKVMKALPF IFTIFFMFFP AGLVLYWVVN NILSVSQQWY
ITRKIEAGEE K
|
|---|
| |