| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_2139 |
|---|
| Symbol | |
|---|
| ID | 3761304 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 2359926 |
|---|
| End bp | 2361110 |
|---|
| Gene Length | 1185 bp |
|---|
| Protein Length | 394 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637786888 |
|---|
| Product | DegT/DnrJ/EryC1/StrS aminotransferase |
|---|
| Protein accession | YP_392401 |
|---|
| Protein GI | 78486476 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0399] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.438896 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGGCT TTGAACTCTT TGACGAGACG GAAAAACAAC AAGTAAATGA AGTCATGGAA
AAGGGCTTCA CTTTCCGCTA CAACTTTGAT GGCATGAGAA ATGATGTCTG GAAAGCGCGC
GAATTAGAAT CGATGATTTG CGACACGCTT CAAGTCAACC ACGCACATCT TGTCTCAAGT
GGAACAACAG CTCTATCAAC GGCTCTTGCT TCGGCAGGCA TTGGCGCGGG AGATGAAGTC
ATTGTTCCTC CTTTCACCTT TGTTGCGTCA GTAGAAGCCA TTGTATTGGC GGGTGCGATT
CCTGTTTTTG CAGAAATCGA TGAAACCTTA ACCCTTTCTG CAGAAGGCAT TGAAGCGGTT
ATCACCCCTC GAACAAAAGC GGTCAACTTT GTTCACATGT GCGGTTCGAT GGGACACATG
GATGACGTCA AAGCTGTCTG TGACAAGCAC AATCTCGTAT TACTGGAAGA TGCGTGTCAA
GCAACAGGCG GAACCTATAA AGGCAAGGCT CTAGGAACCC TAGGCCAAGT TGGAACCCTT
TCATTCGACT CGGTTAAAAC CATTTCTTGT GGTGAAGGTG GCGCCGTACT GACCAACGAC
GAAACAATCT ACAACCACGC GCACCAATAT TCGGACCACG GACATGATCA CATTGGCATG
GATCGAGGCG CAGAAAGCCA CCCTATCATG GGAAGCAACT ATCGCATCTC CGAAATGAAC
GCTGCAGTCG GGGTCGCACA ATGGAAAAAG TTAGACCGCA TTCTTGAGAT TCAACGTAAA
AACAAAAAAG CACTTAAAGA CGCGCTATCA CAATACGACG AAGTGGCTTT CCGCGTCATC
CCTGATGAAG CAGGAGACAA TGCCGGATTC TTAAGCGTGA TTATGCCGAC AGAAGCACGT
GCAAAAGAAG TCGTGAAAGC ATTAGCAGAA GAAAACATTC CTGCGGTTTT CTATTGGTAT
GCAAACAACT GGCATTATCT AAAAAACTGG ACGCATATTC AGAACATGAA AGGGCCAGCT
AAATTACCGA TCGAACTCAT TGCCGATCGA CCTGACTATA CGCAAGTGAA AACACCTAAA
TCAGATGATA TTATGAGCCG AACGTTTTCA ATGCTGATTA ATTTATCTTG GTCGGAAGCT
GACATTCAGC AGCGTATTGA TGCATTTGCA AAAGTATTTA AATAA
|
|---|
| Protein sequence | MPGFELFDET EKQQVNEVME KGFTFRYNFD GMRNDVWKAR ELESMICDTL QVNHAHLVSS
GTTALSTALA SAGIGAGDEV IVPPFTFVAS VEAIVLAGAI PVFAEIDETL TLSAEGIEAV
ITPRTKAVNF VHMCGSMGHM DDVKAVCDKH NLVLLEDACQ ATGGTYKGKA LGTLGQVGTL
SFDSVKTISC GEGGAVLTND ETIYNHAHQY SDHGHDHIGM DRGAESHPIM GSNYRISEMN
AAVGVAQWKK LDRILEIQRK NKKALKDALS QYDEVAFRVI PDEAGDNAGF LSVIMPTEAR
AKEVVKALAE ENIPAVFYWY ANNWHYLKNW THIQNMKGPA KLPIELIADR PDYTQVKTPK
SDDIMSRTFS MLINLSWSEA DIQQRIDAFA KVFK
|
|---|
| |