Gene Tcr_2056 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_2056 
Symbol 
ID3761973 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp2270010 
End bp2272424 
Gene Length2415 bp 
Protein Length804 aa 
Translation table11 
GC content46% 
IMG OID637786805 
Productpenicillin-binding protein 1A 
Protein accessionYP_392320 
Protein GI78486395 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG5009] Membrane carboxypeptidase/penicillin-binding protein 
TIGRFAM ID[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000993377 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCACAG ACTCAAATTC GCAGACGCCT GAAAAAAACG ATACGCCGCC AACGAAAAAA 
CGCAGCCGAT TTAAACGTTT TTTCTGGTTT TCCACTTTCT TCGGATTTAT CATTGCTCCC
GCTACGATCG TGCTGACTTA TGCGATTACC GTTTACCCAA CGCTCCCGGA TGCCTCTACA
TTAAAAGATG TCACCTATCA AGTTCCCTTG AAAATCGTCA CAAAAGATCA TCAGTTGATT
ACCGAAATCG GTACTAAAAA ACGCATCCCA TTAGACTATT CAGAAATCCC CGAAAGAATG
ACGCAGGCAA TTATCTCTTC GGAAGATGAA AGCTTTTTTG AACACGGCGG TGTCGACTAT
AAAGGCTTGG CCCGTGCCGT TTATGAATTG GTGACCACTG GCAGTAAAAA ATCAGGGGGA
TCCACCATCA CCATGCAGGT GGCGCGTAAC TTCTTTTTGA CCAAGAAAAA AACTTATTTA
CGTAAAGTGA ATGAAATTGT TCTGTCTTAT AAAATTGAGC ATCAAATCAG CAAACAGGAA
ATTTTGTCGC TTTATCTCAA CAAAATCTTT TTAGGGTATC GCTCATACGG GGTCGCTGCG
GCCGCTCAAA CGTACTATGG TAAATCGATC AATGAGCTCA CGTTGGATGA ATTTGCCATG
ATTGCTGGGT TGCCCAAAGC CCCATCTCGC TACAACCCTA TCTACAACCC AGAGCGCGCC
AAAATCCGTC GTAACTATGT TTTACGTCGT ATGTATGAAA ATCATTATAT TACTCAGGAA
GAAATGACCC AGGCGCAGAA TGTTCCGGTT CATGCCAAGT TAACCGGGGC TCAAATTGAT
ATTGAAGCCG GGTATGTCGC TGAAATGGCA CGAAGCTTTG CCATTGATAA CTTTGGTGAA
GACGCTTTAA AAAATGGCTT AACGATTGTC ACCACCATTG ACAGCCACCT CCAATCTGTC
GCCAATCAGG CGGTTAGAAG TGGACTGCAA GATTATGAAA GACGCCATGG TTACAGAGGC
CCTATCAAAC ACCTAGCCCC CACACTGCTC ACCGATCAGG AACAACTGTT AGAAACATTG
GACGACATTC CAAAATTTGG TTTCCTTGAA GTGGGCGTGG TCACCGATGT GACCGAAGCC
AATGCCAATG TGTTGATGGC AAACAACGAA CAAATTACTT TGAATTTCGA AGACATGCGA
TGGGCGGCAC CGTATATTGA TGAAAACAAA ACCGGTCCCG ATCCTGAAAG TGCTTTGGAT
GTGCTCACGG CCGGCGATGT GATTTATTTA CAAAACAAAG ACGATCACTG GCAGCTCGCA
CAAGACCCTC AAACCGAATC CGGCCTGGTG TCCATTGACC CTAAAGATGG CAAAATCATT
GCTCTTGTGG GTGGGTTTGA TTACTTTAGA AGTAAATTCA ACCGCGTTCT TCAAGCACAA
CGTCAGGTGG GGTCTAATAT CAAACCATTC TTGTATTCCA GTGCTTTGGA GACGGGGCTG
ACGGCTGCCA GCATCATCAA CGATGCTCCT GTTGTGTTTC ATGACAGTGC CTTAGAAGAC
ACTTGGCGCC CAGAAAATTA TTCTGGTCGT TTCTATGGCC CAACCCGTTT ACGTAAAGCC
TTAGCGCATT CTCGAAATCT GGTATCGATT CGGTTATTAC GCCAAATCGG CATTCGTTAT
GCGGTTAATT ACATGGAACG CTTCGGGTTT CCAAAAGATC AACTCAATGC GCACCGTGAC
CTGTCACTCG CGCTGGGATC GGTCCCGCTG ACGCCTATTC AAGTGGTTCG AGGTTACGCC
ACATTTGCCA ACACCGGTTA TCGCATCGAG CCTTACATCA TTGATTCGGT TTTGGATTTT
AACGGCGACA CGCTGTATAA GGCACACCCT CTAAAAGCGT GTATGACACA ATGCTATGAA
GGCGATCCCC AGAATGCGCC GCGCGTCATT ACGCCACAAA ATGCTTACAT CATGACCTCA
ATGATGCAAG ACGTCATCAA CTATGGCTCT GGGCGTAAAG CCAAAGTGCT AGGACGACAA
GATATTGCTG GAAAAACGGG CACGACCAAT GAACAAAAAG ACGCTTGGTT TTCTGGATTC
AATCCAGAAA TTGCCACCAC CGTTTGGGTC GGATTTGATA CTCCCAAAAC ATTAGGACGC
TCAGAAGTCG GTGGGCGTGC CGCACTGCCG ATTTGGATTG ACTATATGCG TGAAGCATTA
AAGCCTTACC CTAATGCCCC CTTTCCGTTA CCAGAAGGGC TGGTTAATGT ACCCATTGAT
CGTTCAACAG GCATGGCTGT CCCCGCCGAC ACCCCGGGCG CTTTCTTTGA AGTTTTCCGT
GAGGCTTATG CGCCTAAGAT TCCGGACCTT TCCGAAAAAC GAATGGAAGA GATCACGCAA
GAACTGTTCG AATAA
 
Protein sequence
MTTDSNSQTP EKNDTPPTKK RSRFKRFFWF STFFGFIIAP ATIVLTYAIT VYPTLPDAST 
LKDVTYQVPL KIVTKDHQLI TEIGTKKRIP LDYSEIPERM TQAIISSEDE SFFEHGGVDY
KGLARAVYEL VTTGSKKSGG STITMQVARN FFLTKKKTYL RKVNEIVLSY KIEHQISKQE
ILSLYLNKIF LGYRSYGVAA AAQTYYGKSI NELTLDEFAM IAGLPKAPSR YNPIYNPERA
KIRRNYVLRR MYENHYITQE EMTQAQNVPV HAKLTGAQID IEAGYVAEMA RSFAIDNFGE
DALKNGLTIV TTIDSHLQSV ANQAVRSGLQ DYERRHGYRG PIKHLAPTLL TDQEQLLETL
DDIPKFGFLE VGVVTDVTEA NANVLMANNE QITLNFEDMR WAAPYIDENK TGPDPESALD
VLTAGDVIYL QNKDDHWQLA QDPQTESGLV SIDPKDGKII ALVGGFDYFR SKFNRVLQAQ
RQVGSNIKPF LYSSALETGL TAASIINDAP VVFHDSALED TWRPENYSGR FYGPTRLRKA
LAHSRNLVSI RLLRQIGIRY AVNYMERFGF PKDQLNAHRD LSLALGSVPL TPIQVVRGYA
TFANTGYRIE PYIIDSVLDF NGDTLYKAHP LKACMTQCYE GDPQNAPRVI TPQNAYIMTS
MMQDVINYGS GRKAKVLGRQ DIAGKTGTTN EQKDAWFSGF NPEIATTVWV GFDTPKTLGR
SEVGGRAALP IWIDYMREAL KPYPNAPFPL PEGLVNVPID RSTGMAVPAD TPGAFFEVFR
EAYAPKIPDL SEKRMEEITQ ELFE