Gene Tcr_1953 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1953 
Symbol 
ID3761153 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand- 
Start bp2146001 
End bp2146450 
Gene Length450 bp 
Protein Length149 aa 
Translation table11 
GC content44% 
IMG OID637786702 
Productprotein-export protein SecB 
Protein accessionYP_392217 
Protein GI78486292 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1952] Preprotein translocase subunit SecB 
TIGRFAM ID[TIGR00809] protein-export chaperone SecB 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.000000705897 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGAAG AAAACCAAGA AAAACAGTTT GCGATTCAAA AAGTCTATAC GCGTAATGTG 
TCATTTGAAG CACCGAACTC ACCTGAAATT TTTACGCAAG ACTTTCAGCC GCAGCTGGAT 
GTCGACTTAA ATGTGGAAAG CCGCTCGTTA GAAGGTGGCG TGTTTCACGT GGTTGTGCGA 
GTCACAGCGA CGACTAAAAT GGATGACAAA ACCGCTTTTT TATGTGAAGT TGAGCAAGCG 
GGTATTTTTA CTTTAATGGG CTTTGATGAA GGTGAAACGA ATTATTTGTT AGGGGTTCAG 
TGTCCAAATA CGTTATTCCC TTATGCGCGC GAAGCAGTTT CTGATCTGGT CACGCGTGGT 
GGGTTCCCGC AACTGTTGCT CGAGCCTGTG AATTTTGAAG GGATTTATGC AGACCATTTG 
CAAAAGCAAG CCGAATCAAC GAAACAATAA
 
Protein sequence
MSEENQEKQF AIQKVYTRNV SFEAPNSPEI FTQDFQPQLD VDLNVESRSL EGGVFHVVVR 
VTATTKMDDK TAFLCEVEQA GIFTLMGFDE GETNYLLGVQ CPNTLFPYAR EAVSDLVTRG 
GFPQLLLEPV NFEGIYADHL QKQAESTKQ