| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1920 |
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| Symbol | |
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| ID | 3761114 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 2101239 |
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| End bp | 2103920 |
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| Gene Length | 2682 bp |
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| Protein Length | 893 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637786663 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_392184 |
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| Protein GI | 78486259 |
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| COG category | [P] Inorganic ion transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
[COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGTATTC ATTCGATTTT AATCTCCCCT TGTTTGAGGG GATTCATTTT ATTGGTGTCA
TTCTCTTTCT CGCTGAATGG GCAGGCCGCC CTGCAATCAA AAACGCCTTC TTCATCTCTC
ACACCGTTAA CCGTTCAAGT GAATTGGAAT CATCAGTTTC AATTTGCGGG ATTTTATGCC
GCGATTAAAC AAGGGTATTA TCAAGAGGCT GGGTTAAGAG TGACCATGAA AAATTGGCAC
CCAAGAATGC GGTTGGTTGA CGAGGTTGTG TCGGGTCGGG CGGATATTGG GATCGGTTAC
AGTTCAATGA TTGCGGATTA TGCCAAAGGT GCTCCGATCA AACTCATCAT GAGTTCATTT
CAATTCTCTC CCATGGTTTT GCTGTCTCAT CAACCCATTA ATGATCTGGC CGAACTTGAT
GGCAAAACGG TCATGCATTA TGGGAATTTA CAGATTTTAG GATTGATTAA TAAAGCCCAG
AACCTAGTTA AGAACCCGGT AGTATCGGTG GATTCTTCTG GAAAATTAGA TGATTTTATT
CATCATAAAG TCGATTTGTA TGGGGCTTAT ATGACGAATG AACCTTTCCG TTTAAAACAG
CGTAAAAAGG CGTTTTTTAT CGTCGATCCC AAATCCTTCG GAGTGCAGAG TTATGGCGAT
TTAGTCATTA CTTCTGAAAG TCTTGCTGCA CGACATCCTG ATGACATTCA AAAATTTAAA
GCCGCGACCG TCAAAGGCTG GCGGTATGCC ATTCACCATC AAACTGAAAT GGTGGATTAC
ATTATGGAGC ATTATGCGGT TGTGAAATCG CGCGAGGCGT TATTGAATGA AGCCAAGGTG
ACGACACAGT ATGTTCAATC CGGTTTGATT CCGATTGGGG AAGTCGAACC GGCGAAACTG
ATGGCGACGG CAGCAGGAGC GAAAGACGTT GGGTTAATCT CTCAGAAAGA GTTTAATCAA
TTGAATATGA AACAGTTTAT TTTCAATGCG TCACAGTATG CGTACACGGA AGAAGAGTTA
GCCTATTTAG CAAGTCATCC GGTGATTAAA TTGGCTAACG ATATTGATTG GGAACCTTTT
GAATTTATCG ATAAGGAAGG ACATTATCGT GGAATTGCGG CTGATTATTT CGCCCTGCTG
GGGCAAAAAT TAGGCGTTCG TTTTGAGGCA CAAAAATCAT TGGGATGGGC TGAAGTACTG
TCTAAAACGA AAGCCGGTCA GTTAGATATT TTTTCTTGTG CTGTCGCGAC ACCAGAACGT
GAGCAATATA TGCGGTTTAC CAAGCCATAT TTGTCTTTCC CAATGGTTTT GGCGGGCCGA
AAAAATGTTT CGTTTATTGA AAGTTACGAC ACCTTAAAAG GGGAAAAAGT CGCGGTGGTG
AAAGGGTATT GGTCTCATGA AACCTTAACG CAGCACTACC CTAGTATTCA ACTGGTAATT
GTCAATTCGG TTAAGGAAGG GTTAGAAGCG GTCATGGATG GGCGAGCCAA AGTATATTCT
GGAAATCTCG GCGCGATTAA CTATGCAATT CACAAATATG GGGTAACAGG CCTTCATGTT
GTTGGTCAGT CCAGTCATCG TTTTGAATTA GCCATCGGAG TGACGAAGGA TGACCCAGTT
TTGTTTAGTA TTTTACAAAA AGGTTTGGCA TCGATCACGG AAGAGGAACG CCAACAAATT
TTTAATAAAT GGATTCAGCT TGAAGTTGTC AATAAGCTTG ACCGCAAACA ATTGATTGAA
ATAGGCGGTC TCGCGTTTGT CATTATCGTA ACGTTATTAT TTTTCTTGTT AATGTTCCGT
TATCAAAAAA ACAGACAGAA AGCGTATATA GAAAAAATTC ATGAGTTGAC TTACGCCACG
TTAATCAATA TGGAAAATTT TAAATTTGAC TGGGTCAGCG ATGCTTTTAC TCGGTTGTCA
GGTTACAGTC GTGAAGAGTT AGGCTCTATG CGTTATCTCG ATTTGGCAAC AGAAACACTC
TCGCAAGAAG AGCAAGAGAC TATTTTAAAG CAAGTCACGG CGGGGAAAAC GTGGAAAGGT
GAAATGGAAG GGCGGGCAAA AGATGGTCAT TCGTACTGGA TTGAATTGAC ATTGACACCT
GTTCAGAATG TGATGGGACA CATTAAACAA GTTTGGGCAA CACGCGTCGA TATTACGGAC
CGAAAACGTA ATGAACATTT GTCGATAACA GATGACCTGA CTGGGTTGTA TAACCGGCGT
TATTTTAATC AGGTGATTGA GCGGGAAATT AACCGCGCCA AACGAGAGCA AAGAAGTTTG
GCCATTGCCA TGATGGATAT CGATTTCTTT AAGAAAATTA ATGATACCTA TGGGCATCAA
GAAGGTGATC AAGTACTCAA ACAGGTCGCC ACGGTGTTTG AGTCATCCTT TCATCGAGCG
ACGGATTTTG TCTTCCGAAT GGGCGGCGAA GAATTTTTGG TGATTTCGTT GTTTAAAAGC
GAAGCTGAAT TCCAGACGTA TTTAGAACAG TTATGCCTCA AAGTAAAATC GCTTGGCATT
GAGAATGCCG CTTCTTCAGA AGGCGTGTTG ACGATCTCGG TTGGTGCAAT TTATTGTGAA
TCCGACGCGT TGACCAATTC AGAAAAGCTT TATAAAGTGG TCGATCAGCG ACTGTATCAA
GCGAAGCAAA CAGGCCGAAA CAAAGTGGTG ATGACGGACT GA
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| Protein sequence | MGIHSILISP CLRGFILLVS FSFSLNGQAA LQSKTPSSSL TPLTVQVNWN HQFQFAGFYA
AIKQGYYQEA GLRVTMKNWH PRMRLVDEVV SGRADIGIGY SSMIADYAKG APIKLIMSSF
QFSPMVLLSH QPINDLAELD GKTVMHYGNL QILGLINKAQ NLVKNPVVSV DSSGKLDDFI
HHKVDLYGAY MTNEPFRLKQ RKKAFFIVDP KSFGVQSYGD LVITSESLAA RHPDDIQKFK
AATVKGWRYA IHHQTEMVDY IMEHYAVVKS REALLNEAKV TTQYVQSGLI PIGEVEPAKL
MATAAGAKDV GLISQKEFNQ LNMKQFIFNA SQYAYTEEEL AYLASHPVIK LANDIDWEPF
EFIDKEGHYR GIAADYFALL GQKLGVRFEA QKSLGWAEVL SKTKAGQLDI FSCAVATPER
EQYMRFTKPY LSFPMVLAGR KNVSFIESYD TLKGEKVAVV KGYWSHETLT QHYPSIQLVI
VNSVKEGLEA VMDGRAKVYS GNLGAINYAI HKYGVTGLHV VGQSSHRFEL AIGVTKDDPV
LFSILQKGLA SITEEERQQI FNKWIQLEVV NKLDRKQLIE IGGLAFVIIV TLLFFLLMFR
YQKNRQKAYI EKIHELTYAT LINMENFKFD WVSDAFTRLS GYSREELGSM RYLDLATETL
SQEEQETILK QVTAGKTWKG EMEGRAKDGH SYWIELTLTP VQNVMGHIKQ VWATRVDITD
RKRNEHLSIT DDLTGLYNRR YFNQVIEREI NRAKREQRSL AIAMMDIDFF KKINDTYGHQ
EGDQVLKQVA TVFESSFHRA TDFVFRMGGE EFLVISLFKS EAEFQTYLEQ LCLKVKSLGI
ENAASSEGVL TISVGAIYCE SDALTNSEKL YKVVDQRLYQ AKQTGRNKVV MTD
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