Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_1856 |
Symbol | |
ID | 3761069 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | - |
Start bp | 2031032 |
End bp | 2034226 |
Gene Length | 3195 bp |
Protein Length | 1064 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 637786600 |
Product | heavy metal efflux pump CzcA |
Protein accession | YP_392122 |
Protein GI | 78486197 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTACTC GAATGACTGA TTGGGCAGTC ACGAACCGTT TGTTGGTTGT GATTGCTTTG ATAACAATAA TTTCCACCTC TATTTTTATG ATTCCGAAAT TAAATTTGGA TGCTTTTCCC GATGTCACCA ATGTACAAGT TACAGTTAAC ACAGAAGCAC CGGGTTTAGC CTCCGAAGAG GTTGAGCAGC TTATTACCTA TCCGATCGAA GCGGTTATGT ATGCGTTACC AGATGTTGAG GAGGTACGTT CAATTTCGAA AACGGGTCTC TCAGGTGTCA CGATTGTCTT TAAAGAAGGG ACGGATATCT ATTTTGCACG ACAGTTGGTG TTTGAACGCC TGCAATCGGC AAAAGAGTTA ATCCCCGATA ACGTTGGTAC ACCTGAAATA GGTCCCAACA CTTCAGGGTT AGGACAAGTA TATCAATACC TTCTCGTTGC TGAGCCGGGT TCTGGTTATG ATGCTATTGC TCTTCGCAGT TTGAATGATT GGGTTGTTAA ACTGTTATTG ATGCCTGTAG ATGGTATTAC TGATGTTCTC TCATTTGGTG GTGAAGTTCG CCAATACCAA GTGAATATTA ACCCATCTCG CTTGCTAGCT TTTAAGCTGA CACAAGATGA TGTTATTCAT GCTATTGAAC AAAATAATGA CAATGTTGGT GGTTGGTACA TGAACCGTGG TCAAGAACAA CTCATTATTC GTGGTTCAGG TTGGTTTAAC GCTGGCAAAG ATGGCCTTGA AGAAATTCGC CAAGTACCAT TAAAAACAAT TGATGGAAAA GTCATTAAAG TTGCTGATGT TGCAATGGTC GAATTTGGTG GGGAGATTCG TCAAGGGGCA ACAACTATGA CCCGAAGAAC AAATGATGGG CAAGTGGAAA CACTTGGTGA AATTGTTTCA GGTATCGTGC TAAAACGCAT GGGGGCCAAT ACGCAAGCAA CAATAGAAGG AATTGACGAG CGAATTGATA TGATTCAACT GGCCTTGCCA GAAGGAGTTA AGTTTGAAGC GTTCTATGAT CAAACTGATT TAATTGATAA GGCAATCAAT ACCGTTGCAA ATGCTTTAGT AGAGGCATTT ATTTTTATTG TTATTGTTCT GGTCTTGTTT TTATTGAATG TTCGAGCTGT AACATTAGTA CTGATATCGA TTCCATTATC TATTGGGGTC GCACTGGCAA TAATGGCGCA TTATGGTTTG TCGGCCAATT TAATGTCATT GGGTGGTCTT GCCGTAGCTA TCGGGATGAT GGTAGACGGT GCTGTGGTTA TGATGGAAAA TATCTTTAAG CACTTAACAA AACCCGACTC GAGGCATAAT TCTGAACACA GTAAAAATCT TAGCCCAGGT TCTGAAACAC CATATGAATT AGAGCGGGAT CATGGTATTG CTTTGCGGAT TAAATTGGCG GCAAGTGAGG TTGCCAAGCC TATATTTTTT GCCGTATCCA TTATTATGGT AGTTTTTACG CCTCTGTTTT CCTTAGAAGG TGTTGAGGCG AAGTTGTTTC AGCCTATGGC AGTGAGCATT ATGATTGCAA TGGCAGTATC TTTAGTTGTT TCTTTAATTG TTGTGCCTGC GCTAGCGAGT TACTTTTTTC AAAATGGTTT TAAGGAAAGA ACAAGCCCTT TGATGGTTAT TCTGGAAAAG GCGTACCGAA TAGTGCTTGC CAAGGCGATG AATGTTAAAG CGGTTGTCTT ATCAGGTGCC ATTGTGCTAC TCATTTCTGC TCTTATGTTA GTGCCGTACT TAGGAACAGA GTTTGCGCCT GAATTAGAAG AGGGTACGAT AAATTTACGA GTTACCATGG CGCCCTCAAC AAGCTTAGAT ACAGCTTTGT CGGTATCTCC TAAACTTGAA TCTATACTAA TGGAGTTTCC AGAGGTCACT TATGCGGTTA GCCGTATTGG ACGAGCAGAA GTTGGTGGAG ATCCAGAGCC TGTAAGTAAT ATTGAAATCT TTATTGGTTT AAAGCCTGTA TCTGAATGGT CAACAGCAGA CAACCGTCTT GAACTGCAAG AAAAAATGGA AGAGAAGCTT CAACAACATC CAGGGCTTTT ATTCAACTTT TCACAACCTA TTGCAACCCG TATAGATGAG TTGTTATCCG GTGTAAAAGC ACAATTAGCT ATAAAGCTAA TCGGACCAGA CTTGAATGTT CTGTCTGATA AAGGAAAGTT AATTGAAAAA GCCGTCAGAA ATATTGAGGG TGCAAGAGAT GTTGCAATGG AAGCTATTGA AGGAGAAGCG CAATTAGTAA TTAAGCCAAA CCGCCGAGAA CTTTCACGCT ACGGCCTTTC TGTAGGCGAT GTAATGTCCA AAGTGAAAGA TGGGCTCGGA GGTCGTGAAG CTGGGCAAGT CATTAATGGT AACGAACGTT ATGATATTTA TGTGAGGATA GCAGATGAAT TTAGAAATAA CGTTAATGCG ATTTCTGACC TAAGATTGCA GTCTCCATCA GGAGCGGTTG TTAGAATCGG TGATATTGCA ACAGTCTCCA TTGAGTCTGG TCCTCCACAA GTAAGGCGTG ATGATGTGCA GCGTCGCGTC GTTATACAAG CTAACGTTCA AGGACGTGAT ATGGGAGGAG TTGTTAAAGA CATCAGAGAT ACTGTTGCTA AAGAAATAGA TTTACCACCT GGTTATACCG TAGCTATTGG TGGGCAATTT GAAAACCAGC AACGTGCACA AAATCGATTA ATGGTGGTGG TGCCAATTTC AATTGGTTTG ATTGCATTAT TGCTGTACTT TGCATTTAAT TCTGTTGGTC AAGCAATGCT AATTCTAGTT AATTTACCAT TGGCCATGAT TGGTGGAATT GCTGCGCTTT ATATATCAGG GCAGTATTTG TCCGTTCCTA GCTCAATTGG ATTTATTACA TTATTCGGTG TTGCGGTGTT AAATGGCGTA GTTATGGTTG AAGCAATCAA TCACCGGATC ATGGGTGGAA ATGAATCAAT TTCGCAAGCC ATTTTTGAGG GTGCTATTTC AAGGTTAAGA CCTGTGTTAA TGACTGCAAT TATTGCGTCA CTAGGACTAA TTCCAATGAT TATGGCAACA GGGATTGGGT CTGAGATTCA ACGCCCGTTA GCTACAGTGA TTGTAGGGGG ATTAATCTCG TCAACTTTCC TCACTCTTTT TGTTTTGCCA GTACTGTATG AATGGTTCTC AAAAAAGAAA TTAGCTGAAT CATAA
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Protein sequence | MITRMTDWAV TNRLLVVIAL ITIISTSIFM IPKLNLDAFP DVTNVQVTVN TEAPGLASEE VEQLITYPIE AVMYALPDVE EVRSISKTGL SGVTIVFKEG TDIYFARQLV FERLQSAKEL IPDNVGTPEI GPNTSGLGQV YQYLLVAEPG SGYDAIALRS LNDWVVKLLL MPVDGITDVL SFGGEVRQYQ VNINPSRLLA FKLTQDDVIH AIEQNNDNVG GWYMNRGQEQ LIIRGSGWFN AGKDGLEEIR QVPLKTIDGK VIKVADVAMV EFGGEIRQGA TTMTRRTNDG QVETLGEIVS GIVLKRMGAN TQATIEGIDE RIDMIQLALP EGVKFEAFYD QTDLIDKAIN TVANALVEAF IFIVIVLVLF LLNVRAVTLV LISIPLSIGV ALAIMAHYGL SANLMSLGGL AVAIGMMVDG AVVMMENIFK HLTKPDSRHN SEHSKNLSPG SETPYELERD HGIALRIKLA ASEVAKPIFF AVSIIMVVFT PLFSLEGVEA KLFQPMAVSI MIAMAVSLVV SLIVVPALAS YFFQNGFKER TSPLMVILEK AYRIVLAKAM NVKAVVLSGA IVLLISALML VPYLGTEFAP ELEEGTINLR VTMAPSTSLD TALSVSPKLE SILMEFPEVT YAVSRIGRAE VGGDPEPVSN IEIFIGLKPV SEWSTADNRL ELQEKMEEKL QQHPGLLFNF SQPIATRIDE LLSGVKAQLA IKLIGPDLNV LSDKGKLIEK AVRNIEGARD VAMEAIEGEA QLVIKPNRRE LSRYGLSVGD VMSKVKDGLG GREAGQVING NERYDIYVRI ADEFRNNVNA ISDLRLQSPS GAVVRIGDIA TVSIESGPPQ VRRDDVQRRV VIQANVQGRD MGGVVKDIRD TVAKEIDLPP GYTVAIGGQF ENQQRAQNRL MVVVPISIGL IALLLYFAFN SVGQAMLILV NLPLAMIGGI AALYISGQYL SVPSSIGFIT LFGVAVLNGV VMVEAINHRI MGGNESISQA IFEGAISRLR PVLMTAIIAS LGLIPMIMAT GIGSEIQRPL ATVIVGGLIS STFLTLFVLP VLYEWFSKKK LAES
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