| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1820 |
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| Symbol | |
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| ID | 3761392 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 1995197 |
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| End bp | 1996996 |
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| Gene Length | 1800 bp |
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| Protein Length | 599 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637786564 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_392086 |
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| Protein GI | 78486161 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.322861 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGAAAAAG TAGTATTGCC AGTCGAAAAA TGCAAAGGGT TGCAAAACAC CCATCTGGGG
CGAGAACTCC AACAGGTGTT TGAACACCAG GCAATTAGCA CACATTTTCA GCCAATTGTG
GGGCTCAAAA CGCGTTCAAT TTATGCGTTT GAAGCGTTGA CCCGTGGACC GGAAAGTTCA
GCGTTATACT CGCCCGCCAA TTTATTTACC GTTGCGTCGG AGCATAACTG TTTGCTTGAA
ATGGATTTGA TGGCACGGCG GGTTTCCATC AAAAACTATA TGAAAACGGT TTCAACACAC
CAGAATCAAG CCAAGCTGTT TTTAAACATT TCGGTCAGTT CGTTAATGAA TACCGAGCAT
CGCACCGGAC TCACGTTGGA CTGTTTGCAG TATTATGGTT TGAACATTCG TCAAGTGGTC
ATTGAGATTA CCGAATTGCA GCCAGTTGAA GACAGTGGGC TGTTTTTAAA TGCCATCAAA
CATTACCGCA AGATGGGATT TAAGGTGGCG ATTGACGATT TGGGGTCAGG CTACAATGGG
TTGAAGTTAT GGTCGGAAGT GAAGCCTGAT TTTGTCAAAA TTGATAAGCA TTTTATCGCC
AATATCGACA AGCAAGCCGA TAAATATCGT TTTATGGAAA CGATTCTAAC GCTGGCAAAA
AGCTTAGGCA CCAAAATCAT TGCCGAAGGG GTCGAAACCG AAGCGGAGTT GCAGATCCTA
GAGAAACTCG GGGTGGATTT TGTTCAAGGG TTTTTATTGA AAAAACCATC TCCTTCAACT
GCGCTCACGT TGGATTATCA ATGGCGTGAA TCCATCAAAG ACATCGCCAG CCCGAAAGAG
ACGGTGAAGC TGTTGTGTCG CGATGCTTTT ACAATGTCTC CTGACACCAC TGTGGATGCG
ATCACAGAAG AATTGTTGCA CCGTCCGGGG GTGGAGTTTG TTCCGATTGT GGATCAGGGG
CGGGTGCATG GCGTGGTCTG GCGCCGGGAA TTGATCGAGT TATTGGCCAG TAAATTCGGG
CGGGATTTGC ATGGGCGTAA GAACATTTCC AAGGTTATGG ATAAAGCGCC GCTGATCTTT
GACTGGAATA CGCCGTTGGT TGAAGTCAGT CGCGAGATTA CTGAAAACGG CTCGTATGAC
AAAGGTACGT TCATCATCAC CGAAAAAGGG CTGTATAGAG GCTATGGCTC TTTTATGGAA
TTGCTCCGTG TGATTACCGA TTTAAAAATT CGAAGCGCAC AATACGCCAA CCCGCTCTCC
GGTTTGCCAG GAAATGTGCC CATTCAAAAT ACGCTTCAAG AGTACCTGGA TAAACAACTC
CCTTTTGTTG TGATTTATGT CGATGTGGAT AACTTTAAGC CTTATAACGA TCACTACAGC
TTTGAACAGG GAGATCAAGT GATCAGTGAG GTGGCGAAAG TGTTGCAAGA TGCCATAGGG
GAGCAACCCG GTTTTATTGG TCATGTCGGT GGGGATGATT TTGTGGTTGT AATTCCTATG
TTGGCGTATC AAGAAATTTG TCAGCGTATT TTGACGGGCT TTCAAGCCGC CACCGCCAGT
TTTTATACAC AGGAAGATCG TGAGCATGGC GGAATTTATA CGGAAGACCG CTCCGGTGAA
CAGGTTTTTT TCCCAATGAT GACGCTTTCC CTTGGGGTTT TGTTGGTGCA TCCGGGCGTG
TTTGATCATA CTCAGAAGTT ATCTTCCTAC GCGACTCGAG CTAAGAAAGG GGCGAAATCA
GAAGGGGGGA ATACCTATTA TGTGGTGGAT TCTCGCCAAG TCGGATTGCT ACGCGCCTAA
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| Protein sequence | MEKVVLPVEK CKGLQNTHLG RELQQVFEHQ AISTHFQPIV GLKTRSIYAF EALTRGPESS
ALYSPANLFT VASEHNCLLE MDLMARRVSI KNYMKTVSTH QNQAKLFLNI SVSSLMNTEH
RTGLTLDCLQ YYGLNIRQVV IEITELQPVE DSGLFLNAIK HYRKMGFKVA IDDLGSGYNG
LKLWSEVKPD FVKIDKHFIA NIDKQADKYR FMETILTLAK SLGTKIIAEG VETEAELQIL
EKLGVDFVQG FLLKKPSPST ALTLDYQWRE SIKDIASPKE TVKLLCRDAF TMSPDTTVDA
ITEELLHRPG VEFVPIVDQG RVHGVVWRRE LIELLASKFG RDLHGRKNIS KVMDKAPLIF
DWNTPLVEVS REITENGSYD KGTFIITEKG LYRGYGSFME LLRVITDLKI RSAQYANPLS
GLPGNVPIQN TLQEYLDKQL PFVVIYVDVD NFKPYNDHYS FEQGDQVISE VAKVLQDAIG
EQPGFIGHVG GDDFVVVIPM LAYQEICQRI LTGFQAATAS FYTQEDREHG GIYTEDRSGE
QVFFPMMTLS LGVLLVHPGV FDHTQKLSSY ATRAKKGAKS EGGNTYYVVD SRQVGLLRA
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