| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1806 |
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| Symbol | |
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| ID | 3761378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 1981733 |
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| End bp | 1983517 |
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| Gene Length | 1785 bp |
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| Protein Length | 594 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637786550 |
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| Product | sigma 70 (RpoD) |
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| Protein accession | YP_392072 |
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| Protein GI | 78486147 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00000000803488 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAGAG TAGAAAGAAA GCAGCAATTA ATCGATTTGA TTGAAAGAGC CAAGGATCTT
GGTTACTTAA CCTTCTCTGA CGTGAATGAT GTTCTGCCAG ATGATATTGA AGAAGATCAA
CTGGGACAAG TTTTAACGAT TCTAAGGGAT TTTGGAATCC AGCTATTCGA ATCTGCTCCC
GATGCAGATG AGTTATTGAC CAAAGAGGGT GAAACCTTTG ACGATGCCGC GGCTGAAGCC
GCCATCTTGG CTCTAGCGGA AGTGGATGCA GAGTTTGGTC GCACAACTGA CCCTGTTCGT
ATGTATATGC GTGAAATGGG ATCGGTTGAG CTGTTGACGC GCCAAGGCGA AGTCGAGATT
GCAAAACGTA TTGAATACGG CATTCGTGAC ATGCTTGAAG CCATGGCCAA ATACCCACAG
GTTGCCATGG AGCTGTTAGC GTCTTTCTCT CGAATCGAAG ACGGTGAAGG AAAAACCGCC
GATTTGATTC AAGGCTTTAT CCGCCCGGCA GACTTGGTCG ATATTCCAAT TGAAGAACTG
TCGCCAGACA ACGATTCCGG TGAACCAAAA GAAGACGGTA TCAATCCAGA AGAGTTGGAT
GCGTTTTTAC AAAAATTGGC AAAACTGAAT GCCGATACGC TGAAAGCGGA AGAAAAGAAC
GGTTATTCCG ATCCGAAATC CGTTAAAAAG CGCGCTGAAA TTGTCGCATT GCTTGCAACC
GTCAAACTCT CGCCTGTTTT CGTAAACCGC ATGATTAAAG GCATCAAATT ACGCGTTTCA
TCCATTCGTG AACAAGAGCG TAATGTCGTT AATGCTGTGA TGCGTCAAGT GGGCGTGCCT
CGTCCAAGTT TCCTGAAGTT ATTCGTTGGA TCTGAAACAG ACTATGACGT TCTCGATCGC
CTCAAAGAAG CACACCCAGA TAAAGCCGAC GCGCTGGAAG AAGTTCGCGC CGATGTGAAG
CGTGCTCAAA AACGTCTAGC GATGATTGAA AAAGCTGAAA AAATGCCAAT CAATCAATAC
AAAACAATTT ACAAAGATTT AAGTAAAGCC GAAAGCATTG CACGTATTGC AAAACGTGAA
ATGATCGAAG CCAACTTGCG TCTGGTAATC TCGATTGCGA AAAAATACAC CAACCGTGGT
CTGCAATTCC TAGACTTAAT CCAGGAAGGG AATATTGGCC TAATGAAAGC GGTTGAAAAG
TTTGAATATC GCCGTGGTTA CAAATTCTCA ACTTACGCCA CTTGGTGGAT TCGTCAGGCC
ATTACGCGTT CGATTGCCGA TCAGGCTCGT ACGATTCGTA TTCCGGTGCA CATGATCGAA
ACCATTAACA AGCTGAACCG TATTCAGCGT CAGTTACTTC AAAAAATGGG GCGTGAACCA
ACGCCGGAAG AGCTGGCTGA AGAAATGGAA ATGCCGGAAG ACAAAGTTCG TAAAGTGATG
AAAATCGCCA AAGAACCAAT CTCAATGGAA ACACCTGTTG GGGATGATGA AGATTCCTCT
TTGGGCGATT TCATCGAAGA CTCCAATATC TTGTCTCCGC AAGACTCAGC CGATTTAGAA
GGCATGGGTG AAACGGTTCG TGAAATGCTA AGCACCTTAA CACCACGTGA AGCCAAAGTG
CTTCGCATGC GTTTCGGGTT AGGCATGAAC ACGGATCATA CGCTGGAAGA AGTCGGTAAA
CAGTTTGATG TCACGCGTGA GCGTATTCGT CAGATTGAAG CCAAAGCCTT GCGTAAACTT
CGTCACCCAA GTCGTGCGGA ACGCTTAAAA AGCTTCTTAG ATTAA
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| Protein sequence | MTRVERKQQL IDLIERAKDL GYLTFSDVND VLPDDIEEDQ LGQVLTILRD FGIQLFESAP
DADELLTKEG ETFDDAAAEA AILALAEVDA EFGRTTDPVR MYMREMGSVE LLTRQGEVEI
AKRIEYGIRD MLEAMAKYPQ VAMELLASFS RIEDGEGKTA DLIQGFIRPA DLVDIPIEEL
SPDNDSGEPK EDGINPEELD AFLQKLAKLN ADTLKAEEKN GYSDPKSVKK RAEIVALLAT
VKLSPVFVNR MIKGIKLRVS SIREQERNVV NAVMRQVGVP RPSFLKLFVG SETDYDVLDR
LKEAHPDKAD ALEEVRADVK RAQKRLAMIE KAEKMPINQY KTIYKDLSKA ESIARIAKRE
MIEANLRLVI SIAKKYTNRG LQFLDLIQEG NIGLMKAVEK FEYRRGYKFS TYATWWIRQA
ITRSIADQAR TIRIPVHMIE TINKLNRIQR QLLQKMGREP TPEELAEEME MPEDKVRKVM
KIAKEPISME TPVGDDEDSS LGDFIEDSNI LSPQDSADLE GMGETVREML STLTPREAKV
LRMRFGLGMN TDHTLEEVGK QFDVTRERIR QIEAKALRKL RHPSRAERLK SFLD
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