Gene Tcr_1552 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1552 
Symbol 
ID3760811 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp1700256 
End bp1701116 
Gene Length861 bp 
Protein Length286 aa 
Translation table11 
GC content46% 
IMG OID637786288 
Productdihydrodipicolinate synthase 
Protein accessionYP_391818 
Protein GI78485893 
COG category[E] Amino acid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase 
TIGRFAM ID[TIGR00674] dihydrodipicolinate synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000000224782 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGTGGCCT TGGTCACACC CATGATGGGG GACGAATCTG TGGATTTTGA TGCGCTTGAA 
AGATTGATCG AGTTTCATAT CAAATCCAAG ACTAGAGCCA TCGTTGCGAT GGGAACAACA
GGTGAATCAG CTACGTTGGA TTTCCAAGAG CATCGTGATG TGGTCCGTTT TGTGGTGGAA
AAAGCAGCGG GTCGTATTCC GGTTATAGCT GGAACGGGCG CAAACTCAAC CACGGAAGCG
ATTGAGTTGA CGCAATATGC AAAAGAAGTG GGCGCAGATG CCTGCTTGTT AGTGACGCCT
TACTACAACA AACCGACGCA AGAAGGGTTG TATCTGCACT ATAAGAAGAT TGCTCAAACG
GTTGATATCC CTCAGATTCT TTATAATGTT CCAGGTCGAA CGGCTTGTGA TTTATTGCCT
GAAACCATTG GACGCTTATC AACCATTAAC AATATCATCG GCGTAAAAGA AGCCACAGGA
GACGTCAGTC GTGTTAGCCA AATTAAAGAA TTGGTTGATG ATGATTTCGA TTTGTACACC
GGTGATGATG CCACAGCCGT CGACTTCATT TTAGAAGGTG GGCACGGTGG TATTTCGGTC
ACAGCGAATG TGATGCCGGC GTTAGTGTCA GAAGTGTATG ACGAAGCCTT GGCGGGTCAT
GCCGAAAAAG CAAGAATGAT GGATGCGCCT TTAACCGAAT TACATAAAAA CTTATTTGTT
GAAGCCAATC CGATTCCTGT GAAATGGGCC ATGGCAGAAA TGGGGTTGAT GGGCGGAGCG
ATACGTTTGC CGTTAACACC CTTGTCTGAA AAATATCATG CATTGGTGCG CCAAGCTTTA
CAAACTGCGG GAGCGTTATA A
 
Protein sequence
MVALVTPMMG DESVDFDALE RLIEFHIKSK TRAIVAMGTT GESATLDFQE HRDVVRFVVE 
KAAGRIPVIA GTGANSTTEA IELTQYAKEV GADACLLVTP YYNKPTQEGL YLHYKKIAQT
VDIPQILYNV PGRTACDLLP ETIGRLSTIN NIIGVKEATG DVSRVSQIKE LVDDDFDLYT
GDDATAVDFI LEGGHGGISV TANVMPALVS EVYDEALAGH AEKARMMDAP LTELHKNLFV
EANPIPVKWA MAEMGLMGGA IRLPLTPLSE KYHALVRQAL QTAGAL