Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_1428 |
Symbol | |
ID | 3761687 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | + |
Start bp | 1541937 |
End bp | 1545134 |
Gene Length | 3198 bp |
Protein Length | 1065 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637786160 |
Product | heavy metal efflux pump CzcA |
Protein accession | YP_391695 |
Protein GI | 78485770 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.905049 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTTAACC GAATGATTGA TTGGGCGGTT ACTAACCGTT TGCTGGTGAT ACTCGCCCTT ATTACACTGA CGGTCAGTGC TTTTTTTGTT ATCCCCAAAC TGAATCTCGA TGCCTTTCCA GATGTTACCA ATGTGCAGGT ATCCGTTAAT ACTGAAGCTC CGGGGCTAGC TGCTGAAGAG GTTGAGCAGC TTATTACCTA CCCTATTGAA GCCGTGATGT ATGCGTTGCC TGACGTTGAA GAGGTACGCT CCATCTCCAA AACAGGCCTC TCCGGCGTCA CAGTAGTATT CAAGGAAGGC ATGGATATCT ATTTTGCCCG ACAACTCGTG TTTGAACGGT TACAGTCTGC AAAGGAATTG ATTCCTGACG GGGTGGGAAC TCCTGAGATG GGGCCGAATA CCTCAGGCCT AGGACAAGTT TACCAATACC TGCTAATGGC CGAACCGGAT TCAGGCTTTG ATGCTATGGA ATTGCGTAGT TTGAATGACT GGGTAGTAAA GCTATTGCTA CTTCCAGCGG AAGGGGTAAC TGATGTGCTT TCTTTCGGTG GCGAAGTGCG TCAATATCAG GTTAACCTGA ATCCCTCGCG ATTGTTAGCC TATGGCTTAA CACAAGATAG TGTCATGAAG ACTTTGGAAC AAAACAATAC CAATGTCGGT GGTTGGTATA TGAGTCGTGG TCAAGAGCAA TTGGTCATTC GCGGGACAGG ATGGTTTGAT CATGGTGAAC TTGGTTTGAA GCAGATTCGC CAGGTGCCTT TGAAAACGGT GGATGGCACC ACTGTTACTG TTTCAGATGT CGCAGAAGTG GTACTAGGGA GAGAAATCCG CCAGGGTGCC GTTACAATGA CTCGTAAAAA TGAGGATGGA AAAGTCGAAA ATCTTGGCGA AGTCGTGTCC GGTATTGTGC TCAAGCGTAT GGGGGCTAAC ACGAAAGTTA CAATAGATGC AGTTAATGAG CGTTTTGAAC GCATCAATCA AGCATTGCCA GAAGGAGTCC GTTTTGAGGT GTTCTACGAT CAGGCAAATT TAATTACAGC AGCTGTCGAG ACAGTGGTCA ATGCGCTTTT ACTGGCATTT GTTTTTATTG TCGTGATTCT AGCACTGTTC TTGATGAATT TAAGTGCTAC GTTTTTGGTA TTGATCTCCA TTCCCATCTC CATCGGTATC GCCTTGATGG TAATGTCATG GTTTGGTTTA TCAGCTAATT TGATGTCTCT TGGAGGGATT GCGGTAGCTA TTGGGATGTT AGTTGATGGC TCCGTCGTCA TGGTTGAGAA CATGTTTAAA CACTTGTCTC GCCCAGATGC TGAGCATGAT GCCGAAAGAG CATTGCGTGT TGGATCCACA GATAGAGATC CAGTCCGCGC CTGTGGTGAC CATCATGGTA TCGCCTTAAG ATTGCAGGAA GCCGGTAAAG AGGTGGCGCG ACCTATCTTT TTTGCCACGG CCATTATCTT GGTTGTGTTC ATGCCGCTTT TCAGTTTTGA GGGGGTTGAA GCTAAATTGT TTCAGCCTAT GGCTATCAGT ATTATGTTGG CTATGCTTTC GGCAGTTTTA GTGGCCTTGA TTATTGTGCC CGCATTAGCG ACATATCTTT TTCGTAAGGG CGTACGCCAA CGCGAGAGCT TTTTGTTAAA GCCAATCGAT TTTGTCTATC GCAAAAGTTT AACTTGGGCT ATGAGGCATA GCAAAGTTGT TGTAGGTATA GCTGTCTTCA TGGTAATTTC TGCGGCACTT GTCATACCTC GCCTAGGAAC CGAATTCGTG CCTGAACTTG AAGAAGGAAC TATCAACTTG CGTGTCACTT TGGCTCCATC GTCTAGTTTA GAAACTGCAC TGCAAGTGGC CCCTAAGCTG GAGGCAATGC TAATGGAGTT TCCTGAGGTT ACTTATGCAC TGTCGCGTAT TGGTCGCGCC GAAATAGGCG GAGATCCTGA GCCAGTAAAC AACATTGAAA TTTATATCGG GCTCAAACCT ATAAAAGAGT GGCAAACTGC AAAAAATCGT TATGAATTGC AGGCCTTGAT GGAGCAAAAA CTTGAACGAC ATCCCGGTTT GCTTTTCAAT TTCTCTCAAC CAATTGCAAC CCGTGTTGAT GAATTGCTTT CAGGTGTCAA GGCGCAATTG GCCATCAAGC TTTTTGGTCC CGAACTTGAT GTGCTCGCAG ATAAAGGACA AGCAATAGAG AGCGTAGTTA AAAATATCGA AGGCGCTAGA GATGTAGCTA TGGAGCAAAT TGTTGGAGAA TCTCAATTAG TAGTAAAACC GGATCGTCGC GCTTTATCAC GCTATGGACT GAACGTCTCT GACGTAATGG AGCTTGTACG TGAAGGTCTG GGAGGCGCTA GTGCTGGACA AATCATCAAT GGCAACGAGC GTTATGACAT CTATGTCCGG CTGGCTGAGC GCTTCCGTGA AGACCGTGAA ACCATTGCAG ACCTTCGTTT ACAAGCTCCA ACAGGTGCTT GGGTTCGCCT TGAGGATGTG GCCGATGTCA ATATTGCTTC AGGACCTCCT CAGGTTCGTC GTGATGACGT ACAGCGACGT GTGGTTATTC AGGCTAATGT TCAGGGGCGA GACATGGGAA GCGTAGTCTC AGATATTCGT CAGGCAGTTG CTGAACAAGT CGAACTTCCG GCTGGGTATT CTGTCGATAT CGGTGGCCAA TTTGAGAGCC AGCAACGAGC GCAAAAGCGT TTATCACTGG TTGTACCGGT TTCTCTGGGA TTAATCGCCT TGTTGCTTTA TTTCGCTTTT GCTTCGGTTG GTCAGGCTAT GTTAATTCTG GTAAATGTGC CGTTAGCCGT TATTGGTGGC GTTTTTGCAC TTTGGTTTTC TGGCCAATAC TTGTCTGTAC CAGGTTCTGT AGGATTCATT ACCCTCTTTG GGGTAGCCGT ATTAAATGGT GTCGTTATGG TAGAAAGTAT CAATCAACGA ATTATAGATG GTCTATCGGT TTCCGATGCG GTATTTGATG GCGCTACTTC AAGGCTGAGG CCAGTATTAA TGACCGCCAT TACTTCAGCA CTTGGTTTGA TGCCTATGCT ACTTTCCAGT GGTGTTGGTG CAGAAATCCA AAAACCCTTG GCAACAGTAA TCGTGGGCGG TTTAATAACA GCCACATTTT TGACATTGTT TGTGTTGCCA GTGTTATTTG CTTGGTTTTC AAAAGGAAAA ATAAAAGATA TGGCTTAA
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Protein sequence | MFNRMIDWAV TNRLLVILAL ITLTVSAFFV IPKLNLDAFP DVTNVQVSVN TEAPGLAAEE VEQLITYPIE AVMYALPDVE EVRSISKTGL SGVTVVFKEG MDIYFARQLV FERLQSAKEL IPDGVGTPEM GPNTSGLGQV YQYLLMAEPD SGFDAMELRS LNDWVVKLLL LPAEGVTDVL SFGGEVRQYQ VNLNPSRLLA YGLTQDSVMK TLEQNNTNVG GWYMSRGQEQ LVIRGTGWFD HGELGLKQIR QVPLKTVDGT TVTVSDVAEV VLGREIRQGA VTMTRKNEDG KVENLGEVVS GIVLKRMGAN TKVTIDAVNE RFERINQALP EGVRFEVFYD QANLITAAVE TVVNALLLAF VFIVVILALF LMNLSATFLV LISIPISIGI ALMVMSWFGL SANLMSLGGI AVAIGMLVDG SVVMVENMFK HLSRPDAEHD AERALRVGST DRDPVRACGD HHGIALRLQE AGKEVARPIF FATAIILVVF MPLFSFEGVE AKLFQPMAIS IMLAMLSAVL VALIIVPALA TYLFRKGVRQ RESFLLKPID FVYRKSLTWA MRHSKVVVGI AVFMVISAAL VIPRLGTEFV PELEEGTINL RVTLAPSSSL ETALQVAPKL EAMLMEFPEV TYALSRIGRA EIGGDPEPVN NIEIYIGLKP IKEWQTAKNR YELQALMEQK LERHPGLLFN FSQPIATRVD ELLSGVKAQL AIKLFGPELD VLADKGQAIE SVVKNIEGAR DVAMEQIVGE SQLVVKPDRR ALSRYGLNVS DVMELVREGL GGASAGQIIN GNERYDIYVR LAERFREDRE TIADLRLQAP TGAWVRLEDV ADVNIASGPP QVRRDDVQRR VVIQANVQGR DMGSVVSDIR QAVAEQVELP AGYSVDIGGQ FESQQRAQKR LSLVVPVSLG LIALLLYFAF ASVGQAMLIL VNVPLAVIGG VFALWFSGQY LSVPGSVGFI TLFGVAVLNG VVMVESINQR IIDGLSVSDA VFDGATSRLR PVLMTAITSA LGLMPMLLSS GVGAEIQKPL ATVIVGGLIT ATFLTLFVLP VLFAWFSKGK IKDMA
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