Gene Tcr_1416 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1416 
Symbol 
ID3760783 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand- 
Start bp1529132 
End bp1530235 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content43% 
IMG OID637786149 
ProductTRAP dicarboxylate transporter- DctP subunit 
Protein accessionYP_391684 
Protein GI78485759 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component 
TIGRFAM ID[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATATTA AAAGAAGAAA TTTTTTAAAA GCTGGACTTG CGGGATTAGC GACTGCTGGA 
GCGGCATCTA CGGCGATTAT TCCCTCTGCA GCTAATGCAG GTTCTTCCAA AAAATTTCGT 
TGGAAAATGG CGAATGCCTA TCCTGCGGGA GCGCCTTTTT ATTCAAAAGG ACCGGGAAGT 
GCAAGTTACT TTTGTAAGCG TGTAGAAGAG CTATCGGGTG GACGCTTGCG CATTAAACAT 
TATGCTGCTG GTGAGCTAAT TCCTGCAATG GAAGGGTTTG ATGCGGTTTC TAAGGGAACC 
ATCGAAATGA ATTGGGCGAA TTCGTATTAC TGGGCAGGTA AGACGTTTGC AGCGCAATAT 
TTTACAGCCG TTCCTTTTGG TATGAATTTC CAGGGAACCA ATGCCTGGTT ACAAGAAGGT 
GGCGGGCAAG AGCTTTGGGA TGAAGTCTAT AAGCCTTTCA ATGTTATGGG GCTAGCAGCC 
GGTAATACGG GTGTCCAAAT GACAGGGTGG TTCAATAAAG AAATCAATTC TGTTAAAGAC 
CTAAAGGGAC TTCGTATGAG GATCCCTGGA TTAGCGGGTA AGGTTTATGA GCAATTAGGT 
GTCAGCGTTA AACTGCTTCC TGGGGGTGAA ATATTCCCGG CTTTAGAGCG TGGTGTTATT 
GATGCCGCTG AATTTGTTGG CCCTTATCAA GACCGTCGCT TAGGTTTACA AAAAGCTGCT 
AAGTACTACT ACACCACAGG ATGGTCTGAA CCAAGTAATA CAACAGAGTG CTTAATAAAT 
AAAGATGCTT GGGATACTTT ACCTGAAGAC CTTCAGGCAA TTGTTAGAGC TGTGGCTGCG 
GAGTGTAACC TGATGAGTCA TTCGTGGTCA GAAGGAAATA ATGCTGAAGC TTTAGACGAT 
TTAGTTACAA ACCAAGGGGT TGAAGTGCGA ACGCTACCGG ATTCAGTGGT TGCCAAACTA 
AAAGAGACTA CTTTTAAAAC GTTTGACACT TATACAGAAA AAGATCCTTT AGTTAAAAAA 
GTTCATGAAA GTTATTTCGC ATTTAAAGCG AAGCATGATG CGTGGCAAGC ACGTAGCGAA 
GCAGTCGTAA TGACTAAGCT TTAA
 
Protein sequence
MDIKRRNFLK AGLAGLATAG AASTAIIPSA ANAGSSKKFR WKMANAYPAG APFYSKGPGS 
ASYFCKRVEE LSGGRLRIKH YAAGELIPAM EGFDAVSKGT IEMNWANSYY WAGKTFAAQY 
FTAVPFGMNF QGTNAWLQEG GGQELWDEVY KPFNVMGLAA GNTGVQMTGW FNKEINSVKD 
LKGLRMRIPG LAGKVYEQLG VSVKLLPGGE IFPALERGVI DAAEFVGPYQ DRRLGLQKAA 
KYYYTTGWSE PSNTTECLIN KDAWDTLPED LQAIVRAVAA ECNLMSHSWS EGNNAEALDD 
LVTNQGVEVR TLPDSVVAKL KETTFKTFDT YTEKDPLVKK VHESYFAFKA KHDAWQARSE 
AVVMTKL