| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1337 |
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| Symbol | |
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| ID | 3760699 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 1451534 |
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| End bp | 1453597 |
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| Gene Length | 2064 bp |
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| Protein Length | 687 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637786069 |
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| Product | choline/carnitine/betaine transport |
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| Protein accession | YP_391606 |
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| Protein GI | 78485681 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGTTT CCAAAAACGC TTTAAAATCG ACTTTATTAC TGCCGGTCTT TATTCCTGCA
GTCTCTGTCA TATTCTTAAT GATTATTGGA ACATTGAGCA ACCCAGAACT GGCCGGGGAA
TTCTTTGCTG ACGTCTTATC CAGCATCACA CAAAACTTTG GCTGGTTTTA CATGCTGGCC
GTGGCAATTT TTCTGATCTT TATTTTTTCA ATCGCGATTT CGCCGTGGGG AAAAATCAAG
CTAGGCCCCG ATCATATTGA AGCCGACTAC AGTTTTACCG CTTGGTTTGC GATGCTGTTT
TCAGCCGGTT ATGGCATCGC ATTGCTCTTT TTTGGTGTGG CCGAACCGGT TCTGCATTAT
GCTTCACCGC CAGAAGGAAG CCCTGAAACC GTCGCCGCCG CCAAGCAAGC CATGCAAATC
GCCTTTTTCC ATTGGGGCTT TCACATCTGG GCTATTTATG GCTTGGTCGG ACTGACGTTA
GCTTACTTTG CTTTTCGACA TAATTTACCA TTATCCATGC GCTCTACCCT ATTCCCTTTA
ATTGGCGACC GTATTTATGG CCCGATCGGT CATACGGTGG ACACCTTTGC AATTCTGGGA
ACCGTGTTTG GGTTAGCGAC CACGTTAGGC TTATCGGTTA CCCAGATAAA TGCCGGGATT
CATTACCTGA TCCCTTCTAT TCCAATTTCA ACCACCGTAC AAATTTTAGC GTTAGCCATC
ATTACAGGCC TGGCCATTTT TTCAGTGGTG GCGGGCATGG ATAAAGGTAT CCGAAGATTG
TCCTTGCTAA ACATTACGTT GGCTATTGCT TTAATGGCAT TTGTGTTTCT ATCCGGTCCT
TCCGTTTTTA TTTTAGAAGC GTTCTTGCAA AACACAGGAA GTTATCTCAG CAACATCGTT
GAACGAACAT TCAACCTGCA AGCCTATTCC TCAAGTGATT GGATTGGACA CTGGACACTC
TTTATCTTTG GCTGGACCAT CGCCTGGGCG CCTTTTGTCG GCCTCTTCAT TGCGAAAATC
AGCCGTGGAC GCACCATCCG TCAGTTTGTT TTCGGGGTGA TGTTTGTTCC GACGATATTT
ACTTTTTTCT GGTTTTCTGT CTTTGGCGAC ACGGCGCTGC ACCTGATCAT GCAAGAAGGC
TATCACGGAT TTATTCAGGC GGTTCAAAAC GACCATGCCA TTGCCTTATT CAAATTGTTT
GAACACTTGC CTCTCAGCGG TCTTCTCTCC ACCTTAGCGG TCATTTTGAT CATTACATTC
TTTGTCACAT CAGCCGATTC TGGTGCCTTA GTGGTCGACT CTCTTGCCTC TGGTGGCAGT
ATTACAACGC CTGTCTGGCA GAGAATCTTC TGGGCTACGC TGTTGGGAAC GGTTGCCGCA
GTACTGTTAT TAGCCGGCGG ACTTAAAGCC CTGCAAACAG CTTCAATTGT CAGTGCCCTT
CCATTTGCTG TCATCATGTT GATTGCGACG GTTGGCATGT GGCGAGCCTT GATAATTGAA
AGTCACCGAG AAGTGAGTTT AAAAAGTGCA ATGCGTAACA GCGGTAAAAC GCTCACACAA
CATGGCGCTA ACTGGAAAGA CCGTTTAGCA AAACTGGTCG AATACCCGGA CAAGGAAGAA
GTGTCCAGCT TTATTAAAAA AGTAGCGCAT GAAAGCATGA AAACGGTTCA AATCGAATTG
AAACGACGTG GCTGGGAATC TCAAGTCTAT ATGGATGACA GTCCTCTCAG AACCCGAATC
GAAGTCATTA AATCCGAACA AATGGCGTTT ATTTATGAAG TACGTTTATG TGAATTCATT
ATTCCAGGCT TCGCCTTCCC TGAAAGAGGG TCGGAAGAGA GTAAAGAAGA GCACTATTAC
TATCGTGCCG AAGTCTTTTT AAGAGATGGT GGAGAAGCTT ACGACGTCTA TGGTTACAGC
CGTCATAACA TGATTACCGA CATCCTGGAT CACTTTGAAC GCTATTTACA CAAGCTGCAT
CACTCTGCCG AACTCTTGCC TTGGGATATA GAGCAACACG AAAAGCAGTT GCAACCCAAT
CAAAACTTAG CCGAGAAGCC TTAA
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| Protein sequence | MSVSKNALKS TLLLPVFIPA VSVIFLMIIG TLSNPELAGE FFADVLSSIT QNFGWFYMLA
VAIFLIFIFS IAISPWGKIK LGPDHIEADY SFTAWFAMLF SAGYGIALLF FGVAEPVLHY
ASPPEGSPET VAAAKQAMQI AFFHWGFHIW AIYGLVGLTL AYFAFRHNLP LSMRSTLFPL
IGDRIYGPIG HTVDTFAILG TVFGLATTLG LSVTQINAGI HYLIPSIPIS TTVQILALAI
ITGLAIFSVV AGMDKGIRRL SLLNITLAIA LMAFVFLSGP SVFILEAFLQ NTGSYLSNIV
ERTFNLQAYS SSDWIGHWTL FIFGWTIAWA PFVGLFIAKI SRGRTIRQFV FGVMFVPTIF
TFFWFSVFGD TALHLIMQEG YHGFIQAVQN DHAIALFKLF EHLPLSGLLS TLAVILIITF
FVTSADSGAL VVDSLASGGS ITTPVWQRIF WATLLGTVAA VLLLAGGLKA LQTASIVSAL
PFAVIMLIAT VGMWRALIIE SHREVSLKSA MRNSGKTLTQ HGANWKDRLA KLVEYPDKEE
VSSFIKKVAH ESMKTVQIEL KRRGWESQVY MDDSPLRTRI EVIKSEQMAF IYEVRLCEFI
IPGFAFPERG SEESKEEHYY YRAEVFLRDG GEAYDVYGYS RHNMITDILD HFERYLHKLH
HSAELLPWDI EQHEKQLQPN QNLAEKP
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