Gene Tcr_1297 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1297 
Symbol 
ID3760679 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp1413690 
End bp1416365 
Gene Length2676 bp 
Protein Length891 aa 
Translation table11 
GC content38% 
IMG OID637786029 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_391566 
Protein GI78485641 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain
[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.112988 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGATAA TCACCTTTGT CATTATTGGT GTTTATATTG ATGACCAACA AGAAAAACTT 
CAGCAAAAAG CCTACACGAA TAAAACCCAA GAAATTCAAG ACCTGATTAA AACGCTCATT
GAAAACAAGC AAGAGAAGGT TTCTTTAATC ACGTTATCTT TGGCACAAGA CAATAAGTTA
CAAAATGCAC TTTTAAATGA AAATAACCAA CTGTCGTATG ATAACTATTT GAATACATTA
GCAAAAGAAT CTGATTTTAA AAACATTTGG CTTCACATTA TTGACAAACA AGGCCGAAGC
TTTTATCGAA GTTGGACACA AACACATGGC GACAACATTT TAGACAAGCG CTTGGATTTG
CAAAAAATGT TTAAAGATCC AAAGCCCATG CAAACCATCA GTACTGGCGT TTATGATCTT
ACCTTCAAAT CCAGTGTGCC TATTTTTCAT CATAAAAAGT TTATTGGGGT GTTTGAAACC
ATTGCCAAGT TCAACTCCAT CGCATTCAAG CTCAAACAAA AAAACATCGA TCCAGTTTTT
TTAGTGGATA AAAGTTATCA CGCACAACTT AAAAGACCCT TTACCCAAAC CTTTTTAGAC
GACTATTACG TTGCGAACTT AAATGCCAAT CCGGAACGCA TTCAGGACAT CAAGCAAAAT
CGACTTATTC AATACAGTCA TCAACCTCTT CACGCTTCCT ATTACGTCGA CCAACAAAAA
CAGCAACTAA TCACTTATTA CAACCTGCCC AATCTGAATA ATGAACCAAT GGGACATTTC
TTTTTATTTT ATCCTCTGGA TAAAATCGAA ACCGATCAGC TGTCAGCCAA TAAATTCAGC
CTCTACTTTT ATGCGGCAAT TGGATATTTA TTCTTTTTAA TCATTTATTT CTACCAACTT
AATAAACGTG AAAAAACTCA AATTACCGAA TTCAATCAAC GCCTAACCGA ATCTGTTCAC
CAAAAAACGC GTCAACTAAC GCATCAGAAA TATTTCTTAC AAAACGTTAT TGATGGCGTC
TCGGATTCCG TCGTGGTTTA TGATAAAAAC CTCTCCATTA CCATGAAAAA TAAGGCCGCT
GAACAGCTAA TAGGGTTAAC CTCATCGTCA AAACAATACA GTCATGGTGT GAATGAAAAC
AACCAAAATC ATGATTACTT GGAAACAGTC ATTAAGTGCT TAAAATCAGC CAAACCTGAA
AAAACCGTGC ATCACTTCAT TGACCAGAAC CAAACGTCTC GTTATTTCGA ATTTACCGTG
ACCCCCTTGG TGGATGGCAG CGGTCAACTT AATTCCGTCA TTCAACTTGG GCATGAAATC
ACTAATTATT TAGACATCCA AGAACAACTC CAGCAACAAA AAAACGATTT GGATTTCATT
GCCTACCATG ATCCGTTAAC CGATTTACCA AATCGTATTC TCTTTCTTGA TCGCTTAACC
CAAGCCATTC ATCAAGCACA ACGTAATCAT GACAAAGTTG CTTTACTGTT TATCGATCTG
GATCGTTTCA AAGAAATCAA TGACTCCTTT GGTCACGCCA GCGGAGATTT GGTTCTCATT
GAATGCGGAA AACGTCTTAA AAAAGCCATT CGTGAAATTG ATACCGTCGC CCGCCTAGGA
GGCGATGAGT TTACGATTTT GATTGATGAG CTGAAAACCA ACAACGTCAT CATCAATGTG
GTCAAAAAAA TTATTAAAAC ACTTTCTGAT CCGATCTTTG TTAACGAAAA TATCTTTCAT
ATAACGGCCA GCATTGGCAT CAGTATCTTC CCCAACGATG GAACCGACGC CAATCAATTA
TTACAAAATG CCGATGCCGC GATGTATCAA GCAAAAGAAG ACGGTAAAAA CACTTATCAC
TTCTACACCA AAGAAATGAC CGAACAGGCC TATAATCGCT TGCTGATGGA AAACAATTTA
CGTGACGCCC TAGACAACCA ACAGTTTGAA CTGTATTACC AACCTCAAGT GGACATTACA
ACCAATAAAA TTGTTGGTTT TGAAGCATTG GTTCGCTGGA ATCACGAACA AAAAGGCATT
ATCCCGCCCG ATCATTTCAT CCCTTTAGCG GAAGAAACGG GGCTCATTAT ACCGTTAGGA
AAACAAATCA TTGCGATGGC TTCTCAAACC ATTTCTGAAT GGCATCAAGC CAATTTAACG
AATGCACGAA TTGCCATTAA CGTTTCCGCT AAACAGTTGC GAGACAGTCG TTTTTTCCAC
AACCTAAATA CGGCTTTAAA CAAAAATAAC TGCCAACCAG ATTGGATTGA AATTGAAATA
ACGGAAAGTT CCGTCATGCA GAACCCGGAA CTGGCCATCA AGCTCTTAAG CAAACTCAGA
CGAAAAGGCA TCACCATCTC TATCGATGAT TTTGGAACAG GCTACTCCTC TTTAGCTTAT
TTAAAGAAGC TCCCCATCAC CAAAGTCAAA ATAGACCGAT CCTTTGTTTC GAATTTACCT
CAGGATAAAG ATGATGCTGA AATCACCAAA GCCATTATCT CGATGAGCCA GAGTCTAAAC
TTAGACATTA TTGCTGAAGG GATAGAAACA CAGGAACAGC AAAATTTTGT GCTCCAAGAA
GGCTGCAAAT TGATTCAAGG CTATTACTAC AGCCGCCCAC TCACCAAAAA AGCAATGACG
GCAAAACTTG AAAGCCTTCA ATCAAACAAA ACTTAA
 
Protein sequence
MLIITFVIIG VYIDDQQEKL QQKAYTNKTQ EIQDLIKTLI ENKQEKVSLI TLSLAQDNKL 
QNALLNENNQ LSYDNYLNTL AKESDFKNIW LHIIDKQGRS FYRSWTQTHG DNILDKRLDL
QKMFKDPKPM QTISTGVYDL TFKSSVPIFH HKKFIGVFET IAKFNSIAFK LKQKNIDPVF
LVDKSYHAQL KRPFTQTFLD DYYVANLNAN PERIQDIKQN RLIQYSHQPL HASYYVDQQK
QQLITYYNLP NLNNEPMGHF FLFYPLDKIE TDQLSANKFS LYFYAAIGYL FFLIIYFYQL
NKREKTQITE FNQRLTESVH QKTRQLTHQK YFLQNVIDGV SDSVVVYDKN LSITMKNKAA
EQLIGLTSSS KQYSHGVNEN NQNHDYLETV IKCLKSAKPE KTVHHFIDQN QTSRYFEFTV
TPLVDGSGQL NSVIQLGHEI TNYLDIQEQL QQQKNDLDFI AYHDPLTDLP NRILFLDRLT
QAIHQAQRNH DKVALLFIDL DRFKEINDSF GHASGDLVLI ECGKRLKKAI REIDTVARLG
GDEFTILIDE LKTNNVIINV VKKIIKTLSD PIFVNENIFH ITASIGISIF PNDGTDANQL
LQNADAAMYQ AKEDGKNTYH FYTKEMTEQA YNRLLMENNL RDALDNQQFE LYYQPQVDIT
TNKIVGFEAL VRWNHEQKGI IPPDHFIPLA EETGLIIPLG KQIIAMASQT ISEWHQANLT
NARIAINVSA KQLRDSRFFH NLNTALNKNN CQPDWIEIEI TESSVMQNPE LAIKLLSKLR
RKGITISIDD FGTGYSSLAY LKKLPITKVK IDRSFVSNLP QDKDDAEITK AIISMSQSLN
LDIIAEGIET QEQQNFVLQE GCKLIQGYYY SRPLTKKAMT AKLESLQSNK T