| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1291 |
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| Symbol | |
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| ID | 3760673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | + |
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| Start bp | 1406589 |
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| End bp | 1407725 |
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| Gene Length | 1137 bp |
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| Protein Length | 378 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637786023 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_391560 |
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| Protein GI | 78485635 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTCAGAAA CCATTCAACT TGCTCAAAAA CTGATTCAAA CCGAATCGGT CACGCCAAAT
GACAACGGCT GTCAAACCCT TATTGCCGAT TACTTAAAGC CACTTGGTTT TGACATCGAA
CCGATGCCAT TCGGGGAGGT TGAAAACTTA TGGGCAAGAG CAGGCAAAGA TGGCCCGGTG
ATCGTTTTTG CAGGCCATAC TGATGTCGTC CCAACCGGGC CGGAAGAAAA ATGGACACAC
CCGCCTTTCT CCGCGCACAT TGATGCCGAT GGCATAATGT ACGGACGCGG TACCGCAGAC
ATGAAAAGCA GCATTGCCTG CTTTATGGTT GCAACCAAAC AATTCATCAA GCAATATCCA
GATTTTAAAG GCTCCATCGC TTTCTTGATC ACCAGCGATG AAGAAGGCCC GGCGGTCAAT
GGAACCGTTA AAGTCATAGA AGCTTTGGAA GCTCGTAATG AAAAATTTGA ATATTGCTTG
GTCGGAGAAC CTTCCAGCAG TAACACCTTA GGTGATTCCA TTAAAAACGG TCGCCGGGGG
TCTTTAAGCG GACACTTGAC CATAAAAGGG ATCCAAGGGC ACATTGCCTA CCCGCAATTG
GCCGAAAACC CAATCCATAC CCTTTCTCCT GCTTTAAGTG ACATGGTGAA CAAAGTCTGG
GATAAAGGTA ACGACTACTT TCCACCGACG TCGTTTCAGG TATCAAACAT TCATTCCGGA
ACAGGCGCAA CCAATGTTAT TCCAGGAGAT TGTGTTGTTG ATTTTAACTT CCGCTTTTCA
ACCGAACAAA CGCCAGAGAG TCTAAAAGCC GGCATTCATC AAATTTTAGA CAGCCATCAA
CTCAACTATG ACTTGGATTG GAACTTATCA GGACTGCCCT TCATCACGCC CGCGGATGGC
GAGTTAATTC AAGCGGTCTC AAAAGCGATC GAGCAGGAAA TGGGAACCAC TCCTGAGCTT
TCAACCGGTG GCGGTACCTC TGATGGCCGC TTTATTGCAC AGACAGGTGC ACAAGTGATT
GAATTAGGTC CGTTAAATGA TACTATTCAT AAAATAGATG AACGTGTCAG CGTATCAGAT
TTAGAAAAAT TAACTCAAAT CTACCGGAAC ACCCTCATTA ACTTATTGGT GACGTAA
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| Protein sequence | MSETIQLAQK LIQTESVTPN DNGCQTLIAD YLKPLGFDIE PMPFGEVENL WARAGKDGPV
IVFAGHTDVV PTGPEEKWTH PPFSAHIDAD GIMYGRGTAD MKSSIACFMV ATKQFIKQYP
DFKGSIAFLI TSDEEGPAVN GTVKVIEALE ARNEKFEYCL VGEPSSSNTL GDSIKNGRRG
SLSGHLTIKG IQGHIAYPQL AENPIHTLSP ALSDMVNKVW DKGNDYFPPT SFQVSNIHSG
TGATNVIPGD CVVDFNFRFS TEQTPESLKA GIHQILDSHQ LNYDLDWNLS GLPFITPADG
ELIQAVSKAI EQEMGTTPEL STGGGTSDGR FIAQTGAQVI ELGPLNDTIH KIDERVSVSD
LEKLTQIYRN TLINLLVT
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