| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1215 |
|---|
| Symbol | |
|---|
| ID | 3760633 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | - |
|---|
| Start bp | 1330186 |
|---|
| End bp | 1331634 |
|---|
| Gene Length | 1449 bp |
|---|
| Protein Length | 482 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637785943 |
|---|
| Product | 6-phosphogluconate dehydrogenase |
|---|
| Protein accession | YP_391484 |
|---|
| Protein GI | 78485559 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0362] 6-phosphogluconate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00873] 6-phosphogluconate dehydrogenase, decarboxylating |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.000332109 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAAG CAGATATTGG TTTGGTTGGG TTAGCGGTAA TGGGGCAGAA CTTGGTATTA
AACATGGCCG ACCATGGGTA TCACGTCTGT GTCTATAACC GCTCGAAAGA GAAAACAGAT
GACTTTATTC AGAACCGTGT TGAAGATCGT CCAGTCTCAG GGGCGAGTAC GCTTGAAGAG
CTTGTGGGGT GCTTGAAAGC GCCAAGAAAG GTGATGTTGA TGGTTAAGGC GGGAGACGTG
GTTGATTCGT TTATTGACCA ATTAGTGCCT TTGCTTGATA AAGGCGACAT GATCATCGAT
GGCGGAAATT CCCTTTACAC CGATTCCACT CGACGGACGC AAGCTTTAAA GGAAAAAGGC
ATTTTATTTG TTGGCACAGG GGTGTCTGGT GGTGAAGAGG GGGCACGAAC GGGTCCGTCA
ATTATGCCAG GCGGAAACCC GGATGCCTGG GCATCGGTGA AACCCATTTT TCAAGACATT
GCAGCGAAAT CTGATAATGC ACCATGTTGT GACTGGGTGG GCCCTGAAGG TGCAGGGCAT
TATGTCAAAA TGGTGCATAA TGGAATTGAA TACGGTGACA TGCAGCTCAT CACTGAAGCT
TATCAATTAA TGAGAGAAGG GTTAGGATTG TCTGCCGATG AATGTCATCA AGTCTTTTCT
GATTGGAACA ATGGGGTGTT GGATTCGTAT TTGATTGAAA TAACAGCCGA CATCTTAAGT
TTTAAAGATA AGGATGGTGA GCCTCTCGTG GACAAGATAT TGGATGCCGC CGGTCAAAAG
GGAACTGGAA AGTGGACCGG CATCAGTTCT TTGGAATTGG GTATGCCACT GACGTTGATA
ACCGAATCGG TTTATGCGCG GTGTTTATCG GCACTGAAAA CCGAACGGGT CGCCGCATCC
AAGTTGTACC CAAGAAAAAA AATCGTCTCA AAGACCAATA AAGACGCTAT GTTACAAGCC
ATTCATGATG CACTGTACGC GTCCAAAATC ATTTCTTATG CACAAGGTTA CATGTTGATG
TCGGAAGCGG CTAAAGAGTT TGACTGGGAA CTTAATTACG GTGGAATCGC TTTAATGTGG
CGTGGCGGTT GTATTATTCG CAGCACGTTT TTAGCTGAGA TTAAAAAAGC CTATGATGAA
TCGCCAAACC TTTCTAATTT GTTAAGGGCG CCATTTTTTG AAGACGCCAT TAAAAACGCT
GAAGAGAATT GGCGAAAAGC GGTTGTTTTT GGTGTTGAAA GCCAAATTCC GACACCGGCA
CTCAGTTCGG CATTGGCCTT TTTTGATGGG TATCGTAGTG AGCGTTTACC GGCCAATTTA
TTGCAAGCCC AGCGTGACTA TTTTGGCGCC CATACGTATG AAAGAGTCGA TGCACCGAGA
GGCGAATACT TCCATACGGA TTGGATTCAG TCGGGTGGAA ATGTGAGTTC AAGTACATAC
GAGGTGTAA
|
|---|
| Protein sequence | MSKADIGLVG LAVMGQNLVL NMADHGYHVC VYNRSKEKTD DFIQNRVEDR PVSGASTLEE
LVGCLKAPRK VMLMVKAGDV VDSFIDQLVP LLDKGDMIID GGNSLYTDST RRTQALKEKG
ILFVGTGVSG GEEGARTGPS IMPGGNPDAW ASVKPIFQDI AAKSDNAPCC DWVGPEGAGH
YVKMVHNGIE YGDMQLITEA YQLMREGLGL SADECHQVFS DWNNGVLDSY LIEITADILS
FKDKDGEPLV DKILDAAGQK GTGKWTGISS LELGMPLTLI TESVYARCLS ALKTERVAAS
KLYPRKKIVS KTNKDAMLQA IHDALYASKI ISYAQGYMLM SEAAKEFDWE LNYGGIALMW
RGGCIIRSTF LAEIKKAYDE SPNLSNLLRA PFFEDAIKNA EENWRKAVVF GVESQIPTPA
LSSALAFFDG YRSERLPANL LQAQRDYFGA HTYERVDAPR GEYFHTDWIQ SGGNVSSSTY
EV
|
|---|
| |