Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_1205 |
Symbol | |
ID | 3760623 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | - |
Start bp | 1317921 |
End bp | 1319423 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637785933 |
Product | sigma-54 (RpoN) |
Protein accession | YP_391474 |
Protein GI | 78485549 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 0.917032 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTTTAA TGCCAGGTTT ACAGATTAAT ATAGGTCAAC AGCTCAAACT GACTCCCCAA CTGCAACAGT CCATCAAAAT TTTGCAATAC TCTGCACTAG AGGTTCAGCA AACGATTTCG ACGACGCTCG AGACGAATTT CATGTTAGAG CTCGATGAAG ATGGTTCTGA CGATACTGAG GAGTTTGATG CTGCCGATTC TGAGTATGAA GAAGAACCGC TTAACGAGAG CAGTGAAACG GAAACAGAGT TGGATATCGA AGCGTCAGAT ACCCTTTCAG ACGATTTGCA GGCAGATTAT GAGTGGGAAG AGGTTTACAT TGACTCCCCT ATTAGCAACT CTATTAAATC TAATAATAAT GATGACTACA CAGCCCCTGA GAATTACACG TCTGCTGAAG TCACGTTGAG TGAGAAGCTG TACTGGCAGG CGGATATTTA TTCTTGGCCG GACTCTCAAG ATGTCATCGC GTCTTACATT ATTGATGACA TTGATGATGA AGGTTACTTG AAAACGCCAC TGGAAGACAT TATGGCGTCG CTTCAGAAAA ATGAGCCAGA TTTAATTGTC AGCCTAGCCG ATATTGAACA AGTGCTTTCC GTCATTCAGC AGTTTGAACC TACAGGTGTG GGCGCAAGAG ATTTGTCGGA AGGTTTGATT CTTCAGCTTA AAGCGCTTCC ACAAAACCCT TATGTTGTGA CCGCCATTAA AATCATTGAA GAGAATTTTG ATTTACTCAG TGTGCGCGAT TACAAGCGGA TTAAAAAAAT CTATTTATTG AATGATGAGG AGTTAATGGA AGTCATTCAT GTGATTCAGG CTCTCAGTCC GCGTCCGGGA AGAGAATATT CTTCCACGCA AGGGGAAATT GTCATTCCGG ATCTGAAGCT GTATCGTTCA AAAGACGGCT TTATTGTGGA ACTGAATCAA GACGCCTTCC CTCGCCTGAC CATTAATTCA GCTTACATTG ATATGGCCGG CAGTCTGGGA ACGGACAGCT CTGATTCAAA GCAGATAAAA GAACAATTGA TTGAAGCAAA AGGCTTGATC AAAAGTATTC AAAGTCGAGG TGAAACCTTG CTGAGAGTCG GTAAATACAT TATCGAAAAA CAAGCACGCT TTTTTGAAGA AGGTGAACAA GCGATGCAGC CTATGGTATT GCGTGATGTC GCCGAAGCGT TGGAACTGCA TGAGTCAACC ATCTCTCGTG CAACCAATCA GAAATACATG CAAACCCCGC GAGGCACGTT TGAACTGAAG TATTTCTTTT CAACAGGGGT GTCTCAATAT GGCAGTGATG ATCAATCCGC GATTGCGATT AAATCGCACA TTAAGCAGTT GATTGAGGGT GAAGACCCGA ACAAGCCATT GAGTGATAAC AAATTAATGG CCTTGCTGGA AGAAAAAGAA ATCAATGTGG CGCGTCGAAC GATTGCAAAA TATCGTGAAG CACTGCACAT CCCCTCTTCC AGTGAACGTA AAAAACTGAA TAAATTTAAA TAG
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Protein sequence | MALMPGLQIN IGQQLKLTPQ LQQSIKILQY SALEVQQTIS TTLETNFMLE LDEDGSDDTE EFDAADSEYE EEPLNESSET ETELDIEASD TLSDDLQADY EWEEVYIDSP ISNSIKSNNN DDYTAPENYT SAEVTLSEKL YWQADIYSWP DSQDVIASYI IDDIDDEGYL KTPLEDIMAS LQKNEPDLIV SLADIEQVLS VIQQFEPTGV GARDLSEGLI LQLKALPQNP YVVTAIKIIE ENFDLLSVRD YKRIKKIYLL NDEELMEVIH VIQALSPRPG REYSSTQGEI VIPDLKLYRS KDGFIVELNQ DAFPRLTINS AYIDMAGSLG TDSSDSKQIK EQLIEAKGLI KSIQSRGETL LRVGKYIIEK QARFFEEGEQ AMQPMVLRDV AEALELHEST ISRATNQKYM QTPRGTFELK YFFSTGVSQY GSDDQSAIAI KSHIKQLIEG EDPNKPLSDN KLMALLEEKE INVARRTIAK YREALHIPSS SERKKLNKFK
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