Gene Tcr_1193 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_1193 
Symbol 
ID3760611 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand+ 
Start bp1305925 
End bp1307025 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content42% 
IMG OID637785921 
Productchorismate mutase 
Protein accessionYP_391462 
Protein GI78485537 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0077] Prephenate dehydratase
[COG1605] Chorismate mutase 
TIGRFAM ID[TIGR01807] chorismate mutase domain of proteobacterial P-protein, clade 2 


Plasmid Coverage information

Num covering plasmid clones44 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTAACA ACACTGAAAA AGAACAATTA ACCCAGATTC GCGATGAAAT TGATGCCATT 
GATTCTGAGA TTCAAGCCTT AATTTCGCGA CGTGCTGAAT GCGCTCAAAA AGTAGCGGAC 
ATCAAAACGC AGGGTGGTAA GGTTGAGGCA GTGTTTTATC GACCTGAACG TGAAGCGCAA 
GTTCTTAGGG CGGTTAAAGA ACGCAATAAA AGTTTGATTT CAGGGGATGA CATGGCGCGT 
TTATTTCGTG AGATCATGTC GGTTTGCTTA GCGTTGGAAC AACCTATTAA AGTCGCTTAT 
CTTGGACCAG AGGGAAGTTA CAGCCACGCC AGTGTGTTAA AACAATTTGG CTCGTCGGTG 
CACCCTTATG CCGTATCCAG TATTGAAGAA GTGTTTCGTT CCGTTGAAAA AAATGAAGCG 
CACTATGGCT TAGTCCCCGT TGAAAACTCA TCGGAAGGCA TTGTAAAACA AACACAGAAT 
GAATTGATTT CAACGCCTTT AAAAGTATCC GGCGAAGTCA GTCTTGTGAT TCATCACTGC 
CTATTATCGC AAGCAAATCA CCTAGATGAC ATCAAGAAAG TTGTTGCACA TCCTCAAGCT 
TTAGGACAGT GTGAAACCTG GCTTAAAAAC AATATGCCGA GTGCCGAGAT AGAAGCGGTG 
GAATCAAATG CACTGGCAGC TCAAATGGCT CAAAAAGATG CCAGTCTGGG AGCCATTGCT 
TCTGAGCAAG CCGCTCAGCT TTATGAGTTA AAAACACTTG AAACTCACAT TGAAGACCGT 
AAAGACAATA CAACAAAATT CTGGGTTTTA GGGCCTGATG AAACAGACCC AAGTGGGGAT 
GATAAAACGG CAATGGTCAT TGCAATGCCC AACAAAGCAG GAGCGCTGTT AAGTGTCTTA 
TCCAGCTTTG CAGAACGAGA TATCAGTATG ACACGCATTA TTTCGCTTCC GTCTTCAGAA 
ACAAAATGGG ATTACCTGTT TTTTATCGAC GTGATTGGGC ATCAAAAAGA TGCATCTTTA 
ATGGCGGCGA TAAAAGAAGT TCAACAAAAA ACGAACTTTT TTAAATTACT AGGTTCTTTT 
CCTGTGTCTC CTTTAAGTTA A
 
Protein sequence
MTNNTEKEQL TQIRDEIDAI DSEIQALISR RAECAQKVAD IKTQGGKVEA VFYRPEREAQ 
VLRAVKERNK SLISGDDMAR LFREIMSVCL ALEQPIKVAY LGPEGSYSHA SVLKQFGSSV 
HPYAVSSIEE VFRSVEKNEA HYGLVPVENS SEGIVKQTQN ELISTPLKVS GEVSLVIHHC 
LLSQANHLDD IKKVVAHPQA LGQCETWLKN NMPSAEIEAV ESNALAAQMA QKDASLGAIA 
SEQAAQLYEL KTLETHIEDR KDNTTKFWVL GPDETDPSGD DKTAMVIAMP NKAGALLSVL 
SSFAERDISM TRIISLPSSE TKWDYLFFID VIGHQKDASL MAAIKEVQQK TNFFKLLGSF 
PVSPLS