| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1172 |
|---|
| Symbol | |
|---|
| ID | 3760317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 1277583 |
|---|
| End bp | 1278833 |
|---|
| Gene Length | 1251 bp |
|---|
| Protein Length | 416 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637785896 |
|---|
| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
|---|
| Protein accession | YP_391441 |
|---|
| Protein GI | 78485516 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
|---|
| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0830739 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTCAAAT TGCCATTTGA GTTATTGTTG GGCTATCGAT ATACGCGTGC AAAACGTCGA
AATGGGTTTA TCTCATTTAT TTCTTTGTCG TCAATCATCG GAATCGGTTT AGGCGTAACC
GCATTGATTA CGGTTATGTC CATTATGAAC GGGTTTCAAC AAGAGCTCCG TGATCGTATT
TTAGACATGA CAGCACATGT CACCCTGTCA GAACAGGGAG AGCGTTTAAA CCACTGGCAA
GACCTGTACT CGGTCGCAAA ACAATTACCT CATGTGGAAG GGGCGGCACC CAATGCCATG
GGCCAAGGCA TGCTAACGCA TGGTGATCGG GTCAAAGGGG TTTTGGTGCG TGGTGTGCTC
CCGAAATATG AAGGGCAAGT GGCGGATGTT GAATCCAAAA TGGTGTATGG ACATTTATCA
GATTTAAAAT CCAAAGACTA TAACGTTATT CTGGGGACGG AATTGGCCAA TGGGCTAGGC
GTCTCCGTTG GCGACAAAAT CACTTTGGTG GCCCCGCAGG CGTCCATCTC TCCAATGGGA
GTGGTCCCTC GCTTAAAACG CTTTACCGTT TCAGGCTTGT TTGAAGTGGG GATGCATGAG
TATGACAGCG CCTTGGCCAT TGTGCATATG GCCGATGCGC AGCGTGTGTT CAAAATGGGA
CATCAAGTTT CCGCCTTGCA GTTACGACTG GATGATATGT TTGCCGTTCG AGATGTCAGG
GAAGCGGTAG CCGAAAATAT TGATGATGTT CTTTACATGC GAGACTGGAC CCAGCAACAC
TCCAATTTCT TTAAAGCCAT TGAAATGGAA AAACGCATGA TGTTTATTGT TCTGACTTTG
ATCATTATGG TAGCGGCTTT TAATATCGTT TCGACGATGG TGATGGTGGT GACCGATAAA
CAAAAAGATA TTGCTGTATT AAGAACCATC GGCGCCACGC CCGGCAGTGT GCAAACAATT
TTTATCGTGC AAGGTCTCAT TATCGGAACC TTTGGAGCGA TTTTAGGTGT GATAGGCGGG
GTTGCCATTT CATTAAATAT TGATGTGATT GTGCCATTTA TTGAAAGCGT TTTTGGTTTT
AAGTTTTTCC CGGCTGATAT TTATTACATT AGTAAAATTC CGTCAGACTT ACACTGGGAG
GATGTCTGGA CCGTATCTGG TCTAGCCTTT GTCTTAACCT TGTTGGCGAC GATTTATCCG
GCAAGACGTG CTTCAAAAGT TCAACCAGCG GAGGCGTTAC GTTATGAGTG A
|
|---|
| Protein sequence | MFKLPFELLL GYRYTRAKRR NGFISFISLS SIIGIGLGVT ALITVMSIMN GFQQELRDRI
LDMTAHVTLS EQGERLNHWQ DLYSVAKQLP HVEGAAPNAM GQGMLTHGDR VKGVLVRGVL
PKYEGQVADV ESKMVYGHLS DLKSKDYNVI LGTELANGLG VSVGDKITLV APQASISPMG
VVPRLKRFTV SGLFEVGMHE YDSALAIVHM ADAQRVFKMG HQVSALQLRL DDMFAVRDVR
EAVAENIDDV LYMRDWTQQH SNFFKAIEME KRMMFIVLTL IIMVAAFNIV STMVMVVTDK
QKDIAVLRTI GATPGSVQTI FIVQGLIIGT FGAILGVIGG VAISLNIDVI VPFIESVFGF
KFFPADIYYI SKIPSDLHWE DVWTVSGLAF VLTLLATIYP ARRASKVQPA EALRYE
|
|---|
| |