| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1133 |
|---|
| Symbol | |
|---|
| ID | 3762074 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 1224428 |
|---|
| End bp | 1225543 |
|---|
| Gene Length | 1116 bp |
|---|
| Protein Length | 371 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637785854 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_391402 |
|---|
| Protein GI | 78485477 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAA AACCATTAAA ACAATTTTTT GGATCGGCTA TGAATACTCA ACATAAAACT
TGGCTAAGCG GTATTATTTT TTTGATTGTC ATTGCGGTGG CGGTTTCGGT TTATTTAAAA
AAAATGCCTG CAGAGCTACC TGATGATGTT GTGAAGATCA ATGGTCGAAC TGAAGCCGAT
CATTACTTGG CCTCAACCAA GGTTTCAGGC AAGATATTAA AGGTTTTGGT GCGAGAAGGT
GATGAGGTTA AAAAAGATCA GGTTCTGGCA GTTTTAGACG ATGCTCAGGT CAGAGCAAAG
GTGACTCAGG CAGCGGCTGC TTATGGCGCA GCACAAGCCA GATTAAAGGC AGCTAAAACA
GGGTTGAAAG TGTTGAAAAA GCAGGTGCCT TTACAGATCG CTACGGCTGA ATCCACTGTA
CGACACAGTA AAGCAGTTCT AAACAGTGCT GTTGAAAATG CACAGCAAGC AAAACTTGAT
GAACAGCGTT ATGCACGCTT GTATGAAAAA GGCACGATTC AAAAGCACCA GCATGAATCC
GCAGCGTTAG CAAAGAAAAT TGCGGATGAT AATGTGTTGA TTGCCAAAGC CGCGATCAAT
AGAGCGCAAA AAGCATTAAA TGAAGCTAAG CTTGGTTGGC AACAGATTGA AGCCAAACAA
GATGATGTGA ATGCGGTTAA GGCGCAAAAT CTACAAGCTC AAGCGGCGTT GATGGAAGCG
ATGAGCGTAT TCGATGATAT GAAAATCAAA GCCCCGACAA ATGGTGTAAT AACCACGAAA
TTGATTAATG AAGGTGAGGT CATTGCTTCA GGGGCTGGGT TATTTGATAT TGTTAATTTG
AATCAGGTTT ATCTGAAAGG CTATATTGCC GAGAACAAAG TTGGTCTGGT GCACTTAGGG
CAAAAAGCGA TCATTAAAAT TGACTCCATG CCGGAACAAG ATTTCCCAGC CACCGTACGA
TATATTGCGT CGGAAACGGA ATTCACCCCG AAAGAAGTTC AAACCCAAGA TGAGCGCGTT
AAATTGGTGT ATGCCATTAA GTTGTATTTA GACGATAACC CAAAGAAACG AATTACCCCG
GGGTTGCCGG CAGATGCTTA CATTCAGGTG AAGTAA
|
|---|
| Protein sequence | MKQKPLKQFF GSAMNTQHKT WLSGIIFLIV IAVAVSVYLK KMPAELPDDV VKINGRTEAD
HYLASTKVSG KILKVLVREG DEVKKDQVLA VLDDAQVRAK VTQAAAAYGA AQARLKAAKT
GLKVLKKQVP LQIATAESTV RHSKAVLNSA VENAQQAKLD EQRYARLYEK GTIQKHQHES
AALAKKIADD NVLIAKAAIN RAQKALNEAK LGWQQIEAKQ DDVNAVKAQN LQAQAALMEA
MSVFDDMKIK APTNGVITTK LINEGEVIAS GAGLFDIVNL NQVYLKGYIA ENKVGLVHLG
QKAIIKIDSM PEQDFPATVR YIASETEFTP KEVQTQDERV KLVYAIKLYL DDNPKKRITP
GLPADAYIQV K
|
|---|
| |