| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1080 |
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| Symbol | |
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| ID | 3760582 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiomicrospira crunogena XCL-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007520 |
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| Strand | - |
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| Start bp | 1158774 |
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| End bp | 1161077 |
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| Gene Length | 2304 bp |
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| Protein Length | 767 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637785801 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_391349 |
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| Protein GI | 78485424 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTCAAT TTAAAGTCAA CCTCTGGACC TTATTCTATC TAATTGCTAT CAGTAGCTTC
GGATTGTTAA TTTGGTTATC CTTGAATACC TTCCAGCATG AAAAAAAGGA ATTGCATGAC
CATCTATTAG TGGATGCGAA GTTTTTATCG CAAATGGCAC ATGCTTCGTT AGCTGAAAAA
GAGCTTTCAT TAGATGTACT CGGTTCTCGA CTATTTGAAG ACCAAACCTA TCTAGATAAA
ACAGAATCCC AAAAAATATT GGATAAAGCG CTGGAATTAA CACCGAGCTT AATCGGGTTT
GGCGTTTTTT CTTCAGATGG AACCCTTTTG GCCAGCAGCT CAAACATTGA ACATGATATC
ACCCCTAACA TTGCCACACA TACCGCCACC AAAGAGAGTT TTTTAAGAAC GCTTCAAAGC
CATAATATGG TGATCGGTAA AACATATTTC TTCAACCCTC TTAACAGTTG GATCATTCCG
ATTCGAAAAG CGATTCGAAA TCATGAAGGA AAAGTAATGG GTGTGGTAAC CGCCGGATTA
AAAATCGGAA AGAACGGTTT TATCAACCAA AATCACGCGT TGAAAGGCCG TAACATTCTT
ATTGTGAATG ACATCACCAA AAATCGTATT CTGCTGACAG GGATGCCTCA AAATACTTAC
CCTAAACTTT ATCGCGACCC GATTCCGACT GAGACCATCC AAAAGGTCCA GCAATTCTTT
AAAAAAGAAT ACAACCTGTC GATTGACGAC GTTAAACAGC ACACCGAAAC CACTTTTTTA
GAGTTTTATT CTCTAAACAC TCAGCAAGAA GTCGCTGCCG CCACCTTGTA TGACCCCTTG
TATCAAGTCT GGTTTGTTTT GTTTCAAAAC AAAAAAAATC TGCACGACGA AGTGTTCCAC
ACCATTACGG TGTACTTTCT TGTCTTTATG ATTATTTTAG TCTTGATTTA TCAGTTGTTC
AGCATCATTT ATCGCAATGA AAGAGAAACA AAACAAAAAC TGGTTCATCA ATTAACACAT
GACCGCTTAA CGGGATTACC CAATCGGGAA TATATCGATG TCGAACTGAA AGATCCGTTA
ACAACCCCTC AAAACCATTA TGATTTATTG TTTTTAGATT TAGACAATTT TAAAGACATT
AATGATAACT TTGGTCATGA AATTGGAGAC CAAGTGCTTA TTGAAGTGGC GAACCGTTTT
AAACAGGTGC TGGATGAACA AGGCTGGTTG ATCCGCTTTG GCGGAGACGA GTTTGTGTTC
ATTAAACTGC CGGTCAAAAC AGAACTGACC GTTTTTGCAG AACAAATCAT GACAACCCTT
TCCGACCCTT TCATTATTGA AGACATGCGC TTTAATATTG GAGCCAGTAT TGGAATAGCG
TCCTACCCAG GAGATTCAGA GGACCTACAA ACACTTCTAA GTTATGCCGA TTTGGCGATG
TATGAGGCCA AAAAACATAA AAATACCTTT ACCCATTTCT CGAACCACTT ACGAGAAGAT
GCACTGCAAA AAGTTCTGGT TGAACACTTA TTGAAGCAGG CCATTCAAGA TAATGAAATC
AGTATCGTTT ACCAACCACA GCTCAACGTA AAACAAGAAA TGATTGGCGT AGAAGCTCTT
GTTCGTTGGC AAAATGATAC TTTGGGTGAA GTACCACCCA GCACGTTCAT TCCCATCGCC
GAAGAAATGG GATTCATGCC TGAATTAGGT CGGCATATTG CAGACCTGAC GTTATCTGAA
ATGGGCCAGT TGCAACGAAA GCTACATCAA TCATTTGAAG TCTCTATGAA TATCTCCGTT
CGCCAATTTA TGTCGATCGG TTTTTACGAA GACATTACCC GTATGATTGA TGAAAGCGCT
CTCAAACCAG AGCTCATTAT GCTGGAAGTA ACCGAATCTA TTTTTATGGA AGAGCTTGAG
TTTGTCATCG ACATTTTAGA AAAGCTCAAA TCGCACGGAA TCATGTTCTC AATGGACGAT
TTTGGTACGG GCTTCTCATC CCTTAGCTTG CTTAGAACAC TGCCAATCAA TGAGCTCAAA
ATTGATAAGA GCTTTATTGA TGATGTGTTA CAGCAAGAAA AGAACTATGG ACTGGTTGAA
AACATCATTG AAATTGCCCA AAAGCTGAAG ATGCAAACCG TGGCGGAAGG AATTGAAAAT
GAAGCACAAG CCAAACTATT AGAGAAATTT GGCTGTGATA TCTTCCAGGG CTATTATTTT
TCGAAACCCT TGAGCTATGC CCAGCTGGAA ACGTATTTAC AAACCACCCC CATCGGTAAG
ATTTTAAATA CGGTCAAAAA TTGA
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| Protein sequence | MRQFKVNLWT LFYLIAISSF GLLIWLSLNT FQHEKKELHD HLLVDAKFLS QMAHASLAEK
ELSLDVLGSR LFEDQTYLDK TESQKILDKA LELTPSLIGF GVFSSDGTLL ASSSNIEHDI
TPNIATHTAT KESFLRTLQS HNMVIGKTYF FNPLNSWIIP IRKAIRNHEG KVMGVVTAGL
KIGKNGFINQ NHALKGRNIL IVNDITKNRI LLTGMPQNTY PKLYRDPIPT ETIQKVQQFF
KKEYNLSIDD VKQHTETTFL EFYSLNTQQE VAAATLYDPL YQVWFVLFQN KKNLHDEVFH
TITVYFLVFM IILVLIYQLF SIIYRNERET KQKLVHQLTH DRLTGLPNRE YIDVELKDPL
TTPQNHYDLL FLDLDNFKDI NDNFGHEIGD QVLIEVANRF KQVLDEQGWL IRFGGDEFVF
IKLPVKTELT VFAEQIMTTL SDPFIIEDMR FNIGASIGIA SYPGDSEDLQ TLLSYADLAM
YEAKKHKNTF THFSNHLRED ALQKVLVEHL LKQAIQDNEI SIVYQPQLNV KQEMIGVEAL
VRWQNDTLGE VPPSTFIPIA EEMGFMPELG RHIADLTLSE MGQLQRKLHQ SFEVSMNISV
RQFMSIGFYE DITRMIDESA LKPELIMLEV TESIFMEELE FVIDILEKLK SHGIMFSMDD
FGTGFSSLSL LRTLPINELK IDKSFIDDVL QQEKNYGLVE NIIEIAQKLK MQTVAEGIEN
EAQAKLLEKF GCDIFQGYYF SKPLSYAQLE TYLQTTPIGK ILNTVKN
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