| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_1002 |
|---|
| Symbol | |
|---|
| ID | 3760488 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 1080681 |
|---|
| End bp | 1081994 |
|---|
| Gene Length | 1314 bp |
|---|
| Protein Length | 437 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637785723 |
|---|
| Product | dehydrogenase catalytic domain-containing protein |
|---|
| Protein accession | YP_391271 |
|---|
| Protein GI | 78485346 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
|---|
| TIGRFAM ID | [TIGR01348] pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.442522 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACAC AGCAAATTAA TATCCCGGAT ATCGGCGATT TTGATTCAGT AGAAGTTATT
GAAGTTTTAG TCGCCGAAGG AGATGAAGTC GCTGTTGATG ATTCTTTACT CACGTTAGAA
TCAGATAAAG CAACGATGGA AATTCCAGCG CCTTACGCCG GAAAAATCAC CAAAGTCACT
GTTTCAGTCG GCGATAAAGT CGCGGAAGGC GATGCCGTCT TTGAAATCGA AGTGTCTGAA
GCCGCGGCTT CGGAAGAAAA GCCAGCAGAC AAACCGGCCC CTGAAAAAAC GCCTGAAGCG
CCTAAAGAAG CCCCTAAGCC AGCCGCCGAA ACAGCGCCTG CACCGGCCAC GCCTTCGCCA
ACGGCACAAG CGTTAACCAA ACCCGTCAAT GCACAATCTA TGGGCGCTGC ATCACATGCT
TCGCCATCGG TTAGAGCGTT TGCGCGTAAA CTCGGCGTAG ACATCAGCTC CGTGTCTGGA
AGCGGTCCGA AAGGACGTAT CCAGCAATCC GACATCGAAG CTATGATTAA GTCTGTCATG
CAAGGTGGCG CAGGCGCAGG TCAAGCACAA GGCGGCATGG GCATTCCATC CGTTCCTGAA
ATTGACTTCA GCCAGTTCGG TGAAACCGAA ACGGTTGAGT TGGGTCGTAT CAAGAAAATC
TCTGGTAAGT TCCTGCAAAC CAGCTGGTTG AATGTTCCGC ACGTCACACA GTTTGACGAA
TGCGACATCA CTGAAATGGA CGCCTTCCGT AAGAGCATGA AAGCGAAAGC GGAAAAAGAA
GGCGTGAAAT TGACGCCATT GGTCTTCGTG ATGAAAGCCG TGGTCAAAGC GTTGCAAGAC
TTCCCAAGTT TCAATAGCTC TTTATCACCA GATGGTCAGT CGTTGATTAA GAAACAGTAT
TACAACATCG GTGTCGCGGT CGATACGCCA AATGGCTTGG TGGTACCGGT TCTGCGTGAT
GTCGATAAAA AAGGCATCTA TGAACTGTCT CGTGAACTGA TGGAAATTTC CGGCAAAGCA
CGTGACGGTA AATTATCGCC AAAAGATATG TCTGGCGGCA CTTTCACTAT TTCAAGCCTT
GGTGGCATTG GCGGTACACA ATTCACGCCA ATCGTCAACG CTCCGGAAGT GGCTATCATG
GGGCTTTCAA AAGCGAAAAT GCAACCGGTC TGGAACGGGT CTGAATTTGA ACCTCGCTTG
GTCATGCCGT TCAGTGTGTC GTATGACCAC CGTGTGGTCG ATGGCGCGGA AGGCGTTCGC
TTTACCACCA CTGTCGGTCA GTATTTAACT GATCTACGCC AATTGATTCT GTAA
|
|---|
| Protein sequence | MATQQINIPD IGDFDSVEVI EVLVAEGDEV AVDDSLLTLE SDKATMEIPA PYAGKITKVT
VSVGDKVAEG DAVFEIEVSE AAASEEKPAD KPAPEKTPEA PKEAPKPAAE TAPAPATPSP
TAQALTKPVN AQSMGAASHA SPSVRAFARK LGVDISSVSG SGPKGRIQQS DIEAMIKSVM
QGGAGAGQAQ GGMGIPSVPE IDFSQFGETE TVELGRIKKI SGKFLQTSWL NVPHVTQFDE
CDITEMDAFR KSMKAKAEKE GVKLTPLVFV MKAVVKALQD FPSFNSSLSP DGQSLIKKQY
YNIGVAVDTP NGLVVPVLRD VDKKGIYELS RELMEISGKA RDGKLSPKDM SGGTFTISSL
GGIGGTQFTP IVNAPEVAIM GLSKAKMQPV WNGSEFEPRL VMPFSVSYDH RVVDGAEGVR
FTTTVGQYLT DLRQLIL
|
|---|
| |