| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0704 |
|---|
| Symbol | |
|---|
| ID | 3760995 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 774818 |
|---|
| End bp | 775756 |
|---|
| Gene Length | 939 bp |
|---|
| Protein Length | 312 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637785417 |
|---|
| Product | pseudouridine synthase, RluD |
|---|
| Protein accession | YP_390974 |
|---|
| Protein GI | 78485049 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGTGTTA GGTTTATAGA AGTGACTTCT GAAGATGCGG GCCAAAGAGT GGATAACTTT
TTGATGCGTC ACTATCGCAA TGTGCCTAAG ACTTTAATCT ATCGAATTAT TCGTAAAGGC
GAAGTTCGCG TTAATAAAGG GCGCGTTAAG CAAAATACAC GCTTGAATGA TGGTGATACG
GTGCGCGTTC CTCCCATTCG AGTGCCAGAG AAAACGGAAG TGACGGTGCC GACGAATCAG
ATGCAACGAA TTGAAGACAG CATCTTGTAT GAAGACAATG ATTTATTGGT TATCAATAAG
CCATCCGGCA TTGCGGTTCA CGGTGGAAGT GGTATTCAGT GGGGATTGAT TGAGATTGTG
CGGGCTCTGC GTCCATTAGC GAAGCGACTT GAGTTGGTTC ATCGCATAGA TCGTGATACG
TCCGGATGTA TTTTACTGGC TAAGAAAGCT TCGGTGTTAA AAGCGCTGCA TGAACAGATT
CGCGAAAATA AAATGACCAA GGAATATCTG GCGTTGGTTG CACATCATTG GCCGAAAGGT
TTGGAAAAAA TTGATTTGCC TCTATTAAAG AATACGTTGA AGTCAGGCGA GCGGGTTGTG
AAGGTTTCAG ATGAAGGGAA GCCTTCTGTG AGTTATTTTC GAGTGGTTGA GCGCTATCAG
GAGTGTGACC TAGTGGCGGT GCGTTTAAAA ACTGGTCGGA CACACCAGAT TCGAGTTCAT
GCATTATCCC AAGGATGCCC TTTGGTTGGA GATGATAAGT ATGGTGAAAA AGAAACCAAT
AAAATTTTTC GAGCAAAAGG GATGAAGCGT TTAGCGCTGC ATGCTCAGTA TCTAGGATTT
GAACACCCGG TGACAGAGGA ATGGCTAAAG ATAGAAGCTC CTTTGCATGA TGATTTCAAG
CAGACAATAG CAAACTTAAA GAGAGAAAAA AATGAATAA
|
|---|
| Protein sequence | MGVRFIEVTS EDAGQRVDNF LMRHYRNVPK TLIYRIIRKG EVRVNKGRVK QNTRLNDGDT
VRVPPIRVPE KTEVTVPTNQ MQRIEDSILY EDNDLLVINK PSGIAVHGGS GIQWGLIEIV
RALRPLAKRL ELVHRIDRDT SGCILLAKKA SVLKALHEQI RENKMTKEYL ALVAHHWPKG
LEKIDLPLLK NTLKSGERVV KVSDEGKPSV SYFRVVERYQ ECDLVAVRLK TGRTHQIRVH
ALSQGCPLVG DDKYGEKETN KIFRAKGMKR LALHAQYLGF EHPVTEEWLK IEAPLHDDFK
QTIANLKREK NE
|
|---|
| |