Gene Tcr_0648 details

Gene Information

• Locus tag: Tcr_0648
• ID: 3761339
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Thiomicrospira crunogena XCL-2
• Kingdom: Bacteria
• Replicon accession: NC_007520
• Strand: +
• Start bp: 725853
• End bp: 726398
• Gene Length: 546 bp
• Protein Length: 181 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637785361
• Product: 16S rRNA processing protein RimM
• Protein accession: YP_390918
• Protein GI: 78484993
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 0.144328
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATGTCTT CGAAGCAAGA CGAGAAAATC ATTCTCGGTC AAATTAATGG TATTTATGGC 
GTCCAAGGGT GGGTTAAGAT TTTTTCACAT ACCGACCCTC GTCAGAATAT TTTGAGTTAT 
TCTCCTTGGC TCGTTAAGGT CAAGAATGAA TGGCGCACTT TCCAAGTAGA AGAAGGTCGT 
GCTCAGCAAG GTGGCAAAAG TGTTGTTGCC AAGCTGGAAG GCATTGATGA TCGGGATCTG 
GCACGCGAAT ATATTGGGTG CGAAATCGCG ATTCTTCCGG AGCAGTTACC TGCGACCGAA 
GAAGGCTTTT ACTGGATGCA GCTGATTGGC TGTCAAGTGA CCAGTGTAGA AGGTGAAGAC 
CTGGGGCAAG TGACAGAAAT TGTTGAAACG GGTGCGCATG ATGTACTCAG GGTGGAAAAA 
CAGTCTGATG CAGGCTTGGT TTCCACTTTA ATTCCTTTTG TGATGGAAAC TTTTATTTTG 
GATGTGGATG TTGAATCCAA ACAAATACAA GTTGATTGGC AATTGGAAGA TGCAACGGAA 
TCCTGA 

 

Protein sequence

MMSSKQDEKI ILGQINGIYG VQGWVKIFSH TDPRQNILSY SPWLVKVKNE WRTFQVEEGR 
AQQGGKSVVA KLEGIDDRDL AREYIGCEIA ILPEQLPATE EGFYWMQLIG CQVTSVEGED 
LGQVTEIVET GAHDVLRVEK QSDAGLVSTL IPFVMETFIL DVDVESKQIQ VDWQLEDATE 
S