Gene Tcr_0542 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTcr_0542 
Symbol 
ID3761589 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiomicrospira crunogena XCL-2 
KingdomBacteria 
Replicon accessionNC_007520 
Strand
Start bp607277 
End bp608584 
Gene Length1308 bp 
Protein Length435 aa 
Translation table11 
GC content42% 
IMG OID637785254 
Producthistidine kinase 
Protein accessionYP_390812 
Protein GI78484887 
COG category[T] Signal transduction mechanisms 
COG ID[COG5002] Signal transduction histidine kinase 
TIGRFAM ID[TIGR02966] phosphate regulon sensor kinase PhoR 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGTCAAAAG GAATTTCTAG AGAGCTTACA TGGATTGTAA CGGGTCTGTG GGTCGCTCTT 
TTCTTTGGTT GGGCAACCGA ATTATGGACG ATTACGCTCC TGGCCTATTT TCTCTTTTAT
GTGATACGCC AACTTTACAG CATCAAACGC TTTGAACAAT GGATGAAAGG GTCAACCAAA
GTTCCTTATC CTCCGAGTTC CGGGCTATGG GGGGAACTGA GCTACTTAGT GTCTCGCAAA
CAGCGTTCAC TCGAAAAGCA CGCAGATCTT CAGTTCTATA AATCAGAACA ATTCTTAGCC
GCTTCCATGA CTATCCCGGA TGCGATTATT TCTCTAAATG AATATAATCA GATTGAGTGG
TTTAATAAAT CCGCCAAAAA AATCTTCAAA CTTAAGCACA GTGATACTGG GCGAAAAATC
GAAACCTTGT TTCGCCATCC GGATTTTATC CAGTATTTAA AATCAAAACA CTATGGTAAA
GGGATGATTC TTCAATCTCT CAATGGGATG CCGCGGGTGT TTAATATTAA ATTGTTTCCG
TATTTTAAAG AGCATAAATT ATTGATTGTG AAGGATATAC ATGAGTTGTA TAGCCTGGCC
CAGATTCGAC GAGATTTTGT GGCGAACGCT TCGCATGAAT TACGGACTCC TTTAACCGTG
CTGAATGGTT ATCTTGAAGT AATGATTGAC AGTATGGAAC CGGACTCAAC CTGGCAAAAG
CCGCTTGAGC AAATGCATCA GCAGTCTTAT CGAATGCAAT CCATTATTGA TGACCTGTTG
ACGTTGTCGT CTATGGAGTC GGAAACGATC ACCGGGAAAC AAAAGCAGGT GAATGTGCCG
CAAATTTTGC AGGAAATGCA TGTTGATGCA GAACAAATGA GTCATGGCAA ACACACGATA
GATTTTAAAG TGGAGATGAA CTTAGCTTTA AAAGGCTATG AGGAACCATT AAAAAGTGTG
TTTATGAACT TAATTTCGAA TGCAATTCGT TACACGCCGG AAAATAAAGC CATTGAAGTG
CGTTGGTATC ACGACCAAAA AGGCGCGCAT TTCGAAGTTA AAGACAATGG CATCGGGATT
GCCCAAGAAC ACTTGACTCG TTTAACCGAA CGTTTCTATC GAGTGGATAC GGCTCGATCG
AGAGACACAG GGGGAACTGG GCTTGGCTTG GCGATCGTGA AGCACATTCT GGAAAGGCAT
CATGCTAAAT TGGTGGTGAC CAGTCAACTA GGGATAGGAT CGGTCTTCCG ATGCGATTTT
CCAAGTAGAG CGATGGTTTT ATTACAGGAT TCCGAAAAAA AATCATGA
 
Protein sequence
MSKGISRELT WIVTGLWVAL FFGWATELWT ITLLAYFLFY VIRQLYSIKR FEQWMKGSTK 
VPYPPSSGLW GELSYLVSRK QRSLEKHADL QFYKSEQFLA ASMTIPDAII SLNEYNQIEW
FNKSAKKIFK LKHSDTGRKI ETLFRHPDFI QYLKSKHYGK GMILQSLNGM PRVFNIKLFP
YFKEHKLLIV KDIHELYSLA QIRRDFVANA SHELRTPLTV LNGYLEVMID SMEPDSTWQK
PLEQMHQQSY RMQSIIDDLL TLSSMESETI TGKQKQVNVP QILQEMHVDA EQMSHGKHTI
DFKVEMNLAL KGYEEPLKSV FMNLISNAIR YTPENKAIEV RWYHDQKGAH FEVKDNGIGI
AQEHLTRLTE RFYRVDTARS RDTGGTGLGL AIVKHILERH HAKLVVTSQL GIGSVFRCDF
PSRAMVLLQD SEKKS