| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0501 |
|---|
| Symbol | |
|---|
| ID | 3761980 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 560702 |
|---|
| End bp | 562084 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637785212 |
|---|
| Product | coproporphyrinogen III oxidase |
|---|
| Protein accession | YP_390771 |
|---|
| Protein GI | 78484846 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0635] Coproporphyrinogen III oxidase and related Fe-S oxidoreductases |
|---|
| TIGRFAM ID | [TIGR00538] oxygen-independent coproporphyrinogen III oxidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 41 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACAAT CTATTCGATT TGATGAAGAC TTGATCAAAC GGTATAACCA ATCAGGTCCT
AGGTATACGT CTTATCCAAC GGCGGTACAG TTTGATGAAA CGTTTGGCGT AGCGGATTAC
CAAGCCGCTG CGGAACGCAG TAATGCTTCA GATCGAAATC TCTCATTATA TTTTCATATT
CCTTTTTGTG ATACGGTGTG TTTTTTCTGT GCCTGTAATA AAGTCTGGAC ACGTGATCGT
AGCAAAACGA CCCCTTATTT AGCGCGTTTG TATCAAGAAG TTGAAATGCA GGCTAAGTTG
TTTGATTCGA ACCGAAAAGT AGACCAATTG CATTGGGGAG GCGGTACGCC AACTTTCATC
AATATGGATG AAATGCGTGA ATTAATGGCC GTTACCCGCA AGCATTTTAA TTTACACGAT
GATGACTCAG GCGAATATTC GATTGAGATT GATCCGAGAG AAGCCAATAA GGAATCCGTT
AAATTATTGC GAGAGCTTGG GTTTAACCGG ATGAGTTTAG GGGTGCAGGA TTTTGACCCT
AACGTACAAA AAGCCGTGAA TCGAATTCAA ACCGAGGCGC AAACCTTTGA GGTGCTGGAG
GGCGCTCGTG AAGCCGGATT TATGTCGGTG AATGTGGATT TGATTTACGG GTTACCGCAC
CAAACCGAGT CCGGTTTTAT GGCGACTTTA GATAAGGTGC TGGAAGTGGC GCCGGATCGC
TTTTCGATTT TTAACTATGC CCACATGCCA AGCATGTTCC CGACACAAAA GAAAATGAAC
GAAGCGGACA TGCCTTCGCC GGATGAAAAA CTGGCGATTT TGCATGCCAC AACCAATCGT
TTATTGGAAG CGGGTTATGT TTATATCGGC ATGGATCATT TTGCCAAGCC AGATGATGAA
CTTGCGGTTG CACAACGTAA TGAAACGCTT TATCGAAATT TTCAAGGCTA TTCTACCCAT
GCCGAATGTG ACTTGATTGG CATGGGGGCC ACGTCGATTT CATTGATTAA CAATACCTAT
GCACAAAATC ATAAAAGCCT GAATGATTAT TATCAGGCGA TTGATGCTGG GCATCTCGCT
GTGTTCAGGG GGGTGGAATT GACTGAAGAT GATGAGCTGC GTCGTGATGT GATTACACGT
TTAATCAGTC ATTTCCATCT GAATTTCGCC AGCGTTGAAG CTCAGTGGGG TATTGTGTTT
AAAGAGTACT TTGAGCAAGA AATGAACGCA TTGGTTCCGA TGATTGAAGA CGGTTTGATC
GAGTTATCTG ACTCGGATTT GTATGTCACC GCGGCAGGGC GATTATTGAT CCGAAATATT
TGTATGGCAT TTGATGCTTA TTTAAAACAA GGCACTCAAA ACCGGTTTTC AAAAGTGATT
TAA
|
|---|
| Protein sequence | MEQSIRFDED LIKRYNQSGP RYTSYPTAVQ FDETFGVADY QAAAERSNAS DRNLSLYFHI
PFCDTVCFFC ACNKVWTRDR SKTTPYLARL YQEVEMQAKL FDSNRKVDQL HWGGGTPTFI
NMDEMRELMA VTRKHFNLHD DDSGEYSIEI DPREANKESV KLLRELGFNR MSLGVQDFDP
NVQKAVNRIQ TEAQTFEVLE GAREAGFMSV NVDLIYGLPH QTESGFMATL DKVLEVAPDR
FSIFNYAHMP SMFPTQKKMN EADMPSPDEK LAILHATTNR LLEAGYVYIG MDHFAKPDDE
LAVAQRNETL YRNFQGYSTH AECDLIGMGA TSISLINNTY AQNHKSLNDY YQAIDAGHLA
VFRGVELTED DELRRDVITR LISHFHLNFA SVEAQWGIVF KEYFEQEMNA LVPMIEDGLI
ELSDSDLYVT AAGRLLIRNI CMAFDAYLKQ GTQNRFSKVI
|
|---|
| |