| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tcr_0454 |
|---|
| Symbol | |
|---|
| ID | 3761481 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiomicrospira crunogena XCL-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007520 |
|---|
| Strand | + |
|---|
| Start bp | 508730 |
|---|
| End bp | 509851 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637785165 |
|---|
| Product | secretion protein HlyD |
|---|
| Protein accession | YP_390724 |
|---|
| Protein GI | 78484799 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 0.63564 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCA TGTCAAAACT GATGCTAACA AGTAGTTTGA TTGCGATGAT TGGCTTGTCT
GGTTGTGGCC AAGACGCCGC ACAGGAAACA AGTGAAACAA ACGGTATTCA GCAAACCATT
AAAGCGCCAG TTGAAACAGT TAGTTTGGGC ACAATTCCTT TGAAAGCGGT GGTTCCAGGT
GCTGTGGTGC CTGATCAGAA GGCGCAAATT GCGTCACGTT TAATGGGTTA TATTAAGAAC
TTTGAGGTCA AGGTCGGGCA GGAAGTTGAA AAAGGGGATT TACTGTTTTC AATTGATTCC
AGTGATGTCA ACAGTCAGAT TTTAAAGGCA AAATCTGCTT ATCAACAGGC TCAGGCGGCG
CTAAAAGATG CCAAGTTGGA TTACGATCGT TTTTCGAAAC TGTATAAAGA CGATTCGGTT
TCTAAGCAGC AGTTCGATAA AGTCAGTTTG CAATATAAAG TGGCACAAGA GAATCTTGTG
GCTGCGAAAA CCAACCTGAA TCAAGCAAGA TCTCAGTTAA ATTATGCTAA CGTTAAGGCG
CCTTTTGATG GAGTTGTCGT CGATAAGATG GCGGTTGCGG GGGGACTGGC TGCACCTGGA
AATCCGGTGC TGGTTTTAGA AAATTTAACG TCTTTAAGTG TTAAGACTCA GGTTGCGGAA
GATTTATTTG CGGTGTTGCG CCTAGGAGAT GAAGCTGAAG TTATGATTGA TGGTCAACCG
GAATCGATTA AAGGCACGAT TTACACGTTG GTCAGTGCGG CGGACCCTAA AACTCGAACG
CATACCGTTA AATTGAGCTT GCCCTCAATG GTAAGCGTGA ACAGTGGAAC GTTTGCTCGT
GTTGGGTTTA AACGGGGTGA AAGACAAACG ATGATGGTTC CAAAAACTGC GGTATTGAAC
CGTTCAGGTA TTGAAGGCGT TTTTGTCGTC GAAGAGGGTA AAGCCTATTT TCATATGGTG
CGTTTAGGCG AAGAAATTGG CAATAAAGTT GAAATTAAAG CCGGTTTGAA CCTAGGGGAT
CATATCGTTG TTGATAACAA TACGAGTTTG TTAAATGGTG ACAAAGTCGA TGTGATTGAT
TCGGAAAGTT CTGAAAGTAC GGTACAGAAA GGGGCTGCCT AA
|
|---|
| Protein sequence | MKTMSKLMLT SSLIAMIGLS GCGQDAAQET SETNGIQQTI KAPVETVSLG TIPLKAVVPG
AVVPDQKAQI ASRLMGYIKN FEVKVGQEVE KGDLLFSIDS SDVNSQILKA KSAYQQAQAA
LKDAKLDYDR FSKLYKDDSV SKQQFDKVSL QYKVAQENLV AAKTNLNQAR SQLNYANVKA
PFDGVVVDKM AVAGGLAAPG NPVLVLENLT SLSVKTQVAE DLFAVLRLGD EAEVMIDGQP
ESIKGTIYTL VSAADPKTRT HTVKLSLPSM VSVNSGTFAR VGFKRGERQT MMVPKTAVLN
RSGIEGVFVV EEGKAYFHMV RLGEEIGNKV EIKAGLNLGD HIVVDNNTSL LNGDKVDVID
SESSESTVQK GAA
|
|---|
| |