Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tcr_0377 |
Symbol | |
ID | 3762324 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiomicrospira crunogena XCL-2 |
Kingdom | Bacteria |
Replicon accession | NC_007520 |
Strand | - |
Start bp | 425938 |
End bp | 427848 |
Gene Length | 1911 bp |
Protein Length | 636 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 637785086 |
Product | integrase catalytic subunit |
Protein accession | YP_390647 |
Protein GI | 78484722 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.893985 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAAGAATG ACTTATTCTC TGTCGGGTCA GTTTTCAACC TTGAAAACAA TCAATTTATT GTCTCACAAA CAAAAAAAGA TGGGTTCAAA GCATCCAATC TTCGAAATAG CAGTACCTTA ACGTTTACCT ATGAGAAAGC ACAAGAGTTA ATTGATACGC ACGCTCTAAT CTTCCAAAAA GATTCTCTTA GTCAGACAGA AGTCAGTTTC GAAGATCTGC CTCAAGAAGA GCAAAAACTT GCCTTAAAAA AACTAAAGCT CATAGAACTT CTAGCAGAGA GAAGAATTAC TAAAGTATCC GGGACAGAAA AAACTAAAAA AGCCATACTT GATTTATCAT CTGACGCAGG ATTTACAAAA GCACCTCACT GGCAATCAGT TCGAAAATGG TGCATTGAAT TTACAGATGC TGCAGGAAAA ATTAAAGGGC TTTACACTAA TAAAAATTTG CGAGGAAATC GTAAATACCG TCTATCTGCA ATTGTCGAAG AAATTATTGA TACTGAAATC GATAGCTTTA TTAGACCAAG CCAACCAAGA ATTTCAACAC TATGCAGAAA TATTGAAACA GAAATAATTA AATATAATCT AGACAATCCA ACAAATGTGC AGAGAATCCC AACTCGCAAT ACCATTATAA AAAGGTTAAA TAAAACTAAT TTAGAGCGGC GGCAAAGAGC ATCAAAAGGC AGTTCAACGT ATGAGTTAGG TTTAGCGGAT TCAATAGCTC CATTCTCTAC AACTCATATT TTAGAACGAG TTGAAATTGA CCATACACCT CTCGACATAC ACCTTATTCA TGACGTTGAT TCTACGCTTA TTGGAAGACC TACATTAACA GCTCTCTCCG ACTACCATTC AGGCATTGTG CTAGGGTTTC AACTTTCCTT TGAGGCTGCA TCATTCGCAG CCGTTTCTTC AGCTTGTTTA AATGCATTTC TACCAAAACA AGAAGAAATT GAAAGGCTTA ACATTCAAGG AAGCTGGGAA TCTCACGGGA TCCCCGAAAC CTTAGTCACA GACAATGGAA ATGAGTTTTG GAGTGATAAT TTTTCGGAGG TTGGGATGCA GCTCGGCATG GTAATTCAAT ATGCCCCTAT AAGGCACCCG AATTACAAAG GGGCGATTGA AAGACTCTTT GGTTCAATTA ACACATTATT TCTTGATGAT CTGCCTGGGG TTGTGAGAAA GCCGCATAAA AAAAATGATC GTTACGATCC GCGACAAGAA GCACTAATCC CCTTCACAAA ATTTAAATGC GATTTTTACG ATTGGGTAGT AAATGTTTAT AACAATCTTC CAAATGAAGA TGGGGTTACA CCAAAAGAAA TCTGGAATTC TTCAGCCAAG CAACAACCAA TACCTATTGA AGATAATCTT GAAGTTCAGC TTGCTCTTCT CGCATCCCAC GGCGCCACGC TAATGGGCAA TGGGATTTCT TTCCTTGGCC TAAAGTACAA TTCTGATGCA CAAAAGAGTC TTTTTAGACG AGACGGGAAG CACAAAGTTA GCTTTAAAGT AAACCCTTAC GACCTCGGAG AGATACTTGT TTTCGACTCC CGTGAACTAG TCTACATTAC AGTACCATGC CTTGAATATA ACTATGCTAA GGGCACCTCA ATTTATGAAC ATAGAGAATA CAAGCGGATA GCAAGAAAAT ATAAAAACCA AAAACTCAAT AATCAAGATC TCATGCTGGC TAAGATTCGA CAAAAAAATG AAAGAGATAA AATCAGAGGA CAAAATGCCA GAAGAAAAAC TCAGGTCACA ACTCAAAAAC ATACTCGAAT TGAAAAAATT GGAGCACCGA CTTTTGACCT AATACCTTCT AACTCCTCTA AGTCAAATGA AGTACCCGTT GAGCAAACAA CTGTAATAAA GGTTAAAACT GAAGATTGGG ATATTGAATA A
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Protein sequence | MKNDLFSVGS VFNLENNQFI VSQTKKDGFK ASNLRNSSTL TFTYEKAQEL IDTHALIFQK DSLSQTEVSF EDLPQEEQKL ALKKLKLIEL LAERRITKVS GTEKTKKAIL DLSSDAGFTK APHWQSVRKW CIEFTDAAGK IKGLYTNKNL RGNRKYRLSA IVEEIIDTEI DSFIRPSQPR ISTLCRNIET EIIKYNLDNP TNVQRIPTRN TIIKRLNKTN LERRQRASKG SSTYELGLAD SIAPFSTTHI LERVEIDHTP LDIHLIHDVD STLIGRPTLT ALSDYHSGIV LGFQLSFEAA SFAAVSSACL NAFLPKQEEI ERLNIQGSWE SHGIPETLVT DNGNEFWSDN FSEVGMQLGM VIQYAPIRHP NYKGAIERLF GSINTLFLDD LPGVVRKPHK KNDRYDPRQE ALIPFTKFKC DFYDWVVNVY NNLPNEDGVT PKEIWNSSAK QQPIPIEDNL EVQLALLASH GATLMGNGIS FLGLKYNSDA QKSLFRRDGK HKVSFKVNPY DLGEILVFDS RELVYITVPC LEYNYAKGTS IYEHREYKRI ARKYKNQKLN NQDLMLAKIR QKNERDKIRG QNARRKTQVT TQKHTRIEKI GAPTFDLIPS NSSKSNEVPV EQTTVIKVKT EDWDIE
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